Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 AC073621.1-201ENST00000392730 636 ntBASIC17.31■□□□□ 0.36
PCDH9Q9HC56 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 RNA5SP419-201ENST00000515908 135 ntBASIC17.31■□□□□ 0.36
PCDH9Q9HC56 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 AL049840.3-201ENST00000602669 611 ntBASIC17.31■□□□□ 0.36
PCDH9Q9HC56 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 PTCHD3P3-201ENST00000403073 906 ntBASIC17.3■□□□□ 0.36
PCDH9Q9HC56 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 AC136632.2-201ENST00000512891 861 ntBASIC17.3■□□□□ 0.36
PCDH9Q9HC56 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 MIR7706-201ENST00000613747 67 ntBASIC17.3■□□□□ 0.36
PCDH9Q9HC56 MIR1199-201ENST00000621445 119 ntBASIC17.3■□□□□ 0.36
PCDH9Q9HC56 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 AP002414.3-201ENST00000589352 1468 ntBASIC17.3■□□□□ 0.36
PCDH9Q9HC56 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PCDH9Q9HC56 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 GGT3P-204ENST00000453783 1664 ntBASIC17.29■□□□□ 0.36
PCDH9Q9HC56 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 HLA-A-201ENST00000376802 1334 ntBASIC17.29■□□□□ 0.36
PCDH9Q9HC56 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 FDX1P1-201ENST00000449115 551 ntBASIC17.29■□□□□ 0.36
PCDH9Q9HC56 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 AC093909.1-201ENST00000504731 1122 ntBASIC17.29■□□□□ 0.36
PCDH9Q9HC56 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 AL356488.2-201ENST00000602755 427 ntBASIC17.29■□□□□ 0.36
PCDH9Q9HC56 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 AL805961.1-202ENST00000641562 540 ntBASIC17.29■□□□□ 0.36
PCDH9Q9HC56 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 AC005052.1-201ENST00000625181 2492 ntBASIC17.29■□□□□ 0.36
PCDH9Q9HC56 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms