Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.74■□□□□ 0.91
COL5A3P25940 AC015936.2-201ENST00000593177 259 ntBASIC20.74■□□□□ 0.91
COL5A3P25940 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL5A3P25940 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC20.74■□□□□ 0.91
COL5A3P25940 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 AL136982.4-201ENST00000437689 1740 ntBASIC20.74■□□□□ 0.91
COL5A3P25940 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
COL5A3P25940 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC20.74■□□□□ 0.91
COL5A3P25940 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.74■□□□□ 0.91
COL5A3P25940 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.74■□□□□ 0.91
COL5A3P25940 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
COL5A3P25940 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL5A3P25940 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
COL5A3P25940 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
COL5A3P25940 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC20.73■□□□□ 0.91
COL5A3P25940 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC20.73■□□□□ 0.91
COL5A3P25940 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL5A3P25940 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC20.73■□□□□ 0.91
COL5A3P25940 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC20.73■□□□□ 0.91
COL5A3P25940 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
COL5A3P25940 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC20.73■□□□□ 0.91
COL5A3P25940 TMEM261P1-201ENST00000604899 340 ntBASIC20.73■□□□□ 0.91
COL5A3P25940 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL5A3P25940 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC20.73■□□□□ 0.91
COL5A3P25940 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL5A3P25940 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.73■□□□□ 0.91
COL5A3P25940 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC20.73■□□□□ 0.91
COL5A3P25940 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC20.73■□□□□ 0.91
COL5A3P25940 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL5A3P25940 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
COL5A3P25940 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20.73■□□□□ 0.91
COL5A3P25940 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
COL5A3P25940 BNIP3P42-201ENST00000454982 569 ntBASIC20.73■□□□□ 0.91
COL5A3P25940 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.73■□□□□ 0.91
COL5A3P25940 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC20.73■□□□□ 0.91
COL5A3P25940 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.73■□□□□ 0.91
COL5A3P25940 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC20.73■□□□□ 0.91
COL5A3P25940 BNIP3P29-201ENST00000598302 571 ntBASIC20.73■□□□□ 0.91
COL5A3P25940 AC011447.5-201ENST00000616168 564 ntBASIC20.73■□□□□ 0.91
COL5A3P25940 MIR6069-201ENST00000620069 79 ntBASIC20.73■□□□□ 0.91
COL5A3P25940 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL5A3P25940 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A3P25940 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.72■□□□□ 0.91
COL5A3P25940 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
COL5A3P25940 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A3P25940 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A3P25940 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.72■□□□□ 0.91
COL5A3P25940 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.72■□□□□ 0.91
COL5A3P25940 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A3P25940 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A3P25940 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A3P25940 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A3P25940 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC20.72■□□□□ 0.91
COL5A3P25940 CROCCP4-201ENST00000457096 498 ntBASIC20.72■□□□□ 0.91
COL5A3P25940 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC20.72■□□□□ 0.91
COL5A3P25940 AP002490.2-201ENST00000524791 560 ntBASIC20.72■□□□□ 0.91
COL5A3P25940 NEU3-203ENST00000529024 581 ntTSL 3 BASIC20.72■□□□□ 0.91
COL5A3P25940 MIR8072-201ENST00000614241 80 ntBASIC20.72■□□□□ 0.91
COL5A3P25940 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC20.72■□□□□ 0.91
COL5A3P25940 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC20.72■□□□□ 0.91
COL5A3P25940 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL5A3P25940 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.71■□□□□ 0.91
COL5A3P25940 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
COL5A3P25940 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
COL5A3P25940 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 AC018665.1-201ENST00000622927 1362 ntBASIC20.71■□□□□ 0.91
COL5A3P25940 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.71■□□□□ 0.91
COL5A3P25940 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL5A3P25940 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms