Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC13.05□□□□□ -0.32
CXCL1P09341 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC13.05□□□□□ -0.32
CXCL1P09341 REXO1L10P-201ENST00000615707 1290 ntBASIC13.05□□□□□ -0.32
CXCL1P09341 REXO1L12P-201ENST00000622156 912 ntBASIC13.05□□□□□ -0.32
CXCL1P09341 AC010653.2-201ENST00000623505 997 ntBASIC13.05□□□□□ -0.32
CXCL1P09341 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.05□□□□□ -0.32
CXCL1P09341 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CXCL1P09341 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC13.05□□□□□ -0.32
CXCL1P09341 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC13.05□□□□□ -0.32
CXCL1P09341 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.05□□□□□ -0.32
CXCL1P09341 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.05□□□□□ -0.32
CXCL1P09341 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.05□□□□□ -0.32
CXCL1P09341 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC13.05□□□□□ -0.32
CXCL1P09341 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.05□□□□□ -0.32
CXCL1P09341 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.05□□□□□ -0.32
CXCL1P09341 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CXCL1P09341 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.04□□□□□ -0.32
CXCL1P09341 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CXCL1P09341 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.04□□□□□ -0.32
CXCL1P09341 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.04□□□□□ -0.32
CXCL1P09341 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CXCL1P09341 AC012618.2-201ENST00000428058 849 ntBASIC13.04□□□□□ -0.32
CXCL1P09341 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC13.04□□□□□ -0.32
CXCL1P09341 GXYLT1P6-201ENST00000456472 1187 ntBASIC13.04□□□□□ -0.32
CXCL1P09341 SEC1P-202ENST00000473944 940 ntBASIC13.04□□□□□ -0.32
CXCL1P09341 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC13.04□□□□□ -0.32
CXCL1P09341 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
CXCL1P09341 AL139327.4-201ENST00000612362 153 ntBASIC13.04□□□□□ -0.32
CXCL1P09341 AC116562.4-202ENST00000641738 218 ntBASIC13.04□□□□□ -0.32
CXCL1P09341 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.04□□□□□ -0.32
CXCL1P09341 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
CXCL1P09341 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CXCL1P09341 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.04□□□□□ -0.32
CXCL1P09341 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC13.04□□□□□ -0.32
CXCL1P09341 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
CXCL1P09341 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CXCL1P09341 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC13.04□□□□□ -0.32
CXCL1P09341 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
CXCL1P09341 BX276092.7-203ENST00000637198 1536 ntBASIC13.03□□□□□ -0.32
CXCL1P09341 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
CXCL1P09341 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CXCL1P09341 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.03□□□□□ -0.32
CXCL1P09341 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 AL645728.1-201ENST00000366221 2101 ntBASIC13.03□□□□□ -0.32
CXCL1P09341 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.03□□□□□ -0.32
CXCL1P09341 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.03□□□□□ -0.32
CXCL1P09341 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
CXCL1P09341 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.03□□□□□ -0.32
CXCL1P09341 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CXCL1P09341 ABHD17AP1-201ENST00000358206 933 ntBASIC13.03□□□□□ -0.32
CXCL1P09341 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC13.03□□□□□ -0.32
CXCL1P09341 PVRIG2P-201ENST00000435460 978 ntBASIC13.03□□□□□ -0.32
CXCL1P09341 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC13.03□□□□□ -0.32
CXCL1P09341 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC13.03□□□□□ -0.32
CXCL1P09341 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC13.03□□□□□ -0.32
CXCL1P09341 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC13.03□□□□□ -0.32
CXCL1P09341 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC13.03□□□□□ -0.32
CXCL1P09341 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.03□□□□□ -0.32
CXCL1P09341 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CXCL1P09341 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms