Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SLC22A20-204ENST00000530038 1673 ntBASIC21.08■□□□□ 0.96
NPHP1O15259 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPHP1O15259 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
NPHP1O15259 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
NPHP1O15259 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
NPHP1O15259 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP1O15259 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP1O15259 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC21.07■□□□□ 0.96
NPHP1O15259 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP1O15259 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP1O15259 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP1O15259 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP1O15259 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
NPHP1O15259 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC21.07■□□□□ 0.96
NPHP1O15259 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP1O15259 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC21.07■□□□□ 0.96
NPHP1O15259 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC21.07■□□□□ 0.96
NPHP1O15259 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC21.07■□□□□ 0.96
NPHP1O15259 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC21.07■□□□□ 0.96
NPHP1O15259 AC009118.2-201ENST00000613275 655 ntBASIC21.07■□□□□ 0.96
NPHP1O15259 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.07■□□□□ 0.96
NPHP1O15259 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP1O15259 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
NPHP1O15259 TDG-209ENST00000544861 1387 ntTSL 2 BASIC21.07■□□□□ 0.96
NPHP1O15259 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.07■□□□□ 0.96
NPHP1O15259 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
NPHP1O15259 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP1O15259 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
NPHP1O15259 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP1O15259 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
NPHP1O15259 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
NPHP1O15259 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP1O15259 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP1O15259 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP1O15259 STARD13-205ENST00000439831 945 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP1O15259 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.06■□□□□ 0.96
NPHP1O15259 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP1O15259 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP1O15259 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 SSH2-211ENST00000590153 570 ntTSL 4 BASIC21.06■□□□□ 0.96
NPHP1O15259 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
NPHP1O15259 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
NPHP1O15259 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 AC131009.4-201ENST00000624048 1740 ntBASIC21.06■□□□□ 0.96
NPHP1O15259 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP1O15259 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP1O15259 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP1O15259 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.05■□□□□ 0.96
NPHP1O15259 HARS-204ENST00000438307 1789 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP1O15259 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
NPHP1O15259 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP1O15259 MIR346-201ENST00000362234 95 ntBASIC21.05■□□□□ 0.96
NPHP1O15259 HNRNPA3P1-201ENST00000401429 1139 ntBASIC21.05■□□□□ 0.96
NPHP1O15259 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC21.05■□□□□ 0.96
NPHP1O15259 HNRNPA3P5-201ENST00000455201 833 ntBASIC21.05■□□□□ 0.96
NPHP1O15259 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP1O15259 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC21.05■□□□□ 0.96
NPHP1O15259 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP1O15259 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
NPHP1O15259 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
NPHP1O15259 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.05■□□□□ 0.96
NPHP1O15259 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
NPHP1O15259 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP1O15259 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP1O15259 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP1O15259 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP1O15259 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP1O15259 AC100757.3-201ENST00000622361 1406 ntBASIC21.04■□□□□ 0.96
NPHP1O15259 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms