Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC010328.2-201ENST00000597698 1111 ntBASIC19.48■□□□□ 0.71
SCN4AP35499 AC013467.2-201ENST00000605472 835 ntBASIC19.48■□□□□ 0.71
SCN4AP35499 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.48■□□□□ 0.71
SCN4AP35499 AC016396.2-201ENST00000562575 1417 ntBASIC19.48■□□□□ 0.71
SCN4AP35499 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN4AP35499 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SCN4AP35499 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.48■□□□□ 0.71
SCN4AP35499 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SCN4AP35499 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN4AP35499 ACTG1P3-201ENST00000431775 1114 ntBASIC19.48■□□□□ 0.71
SCN4AP35499 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN4AP35499 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN4AP35499 RN7SL399P-201ENST00000471648 279 ntBASIC19.48■□□□□ 0.71
SCN4AP35499 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 PTP4A1P2-201ENST00000546033 454 ntBASIC19.48■□□□□ 0.71
SCN4AP35499 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.48■□□□□ 0.71
SCN4AP35499 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN4AP35499 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN4AP35499 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SCN4AP35499 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.48■□□□□ 0.71
SCN4AP35499 AC116353.5-201ENST00000638148 1699 ntBASIC19.47■□□□□ 0.71
SCN4AP35499 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.47■□□□□ 0.71
SCN4AP35499 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 AL355864.2-201ENST00000447420 863 ntBASIC19.47■□□□□ 0.71
SCN4AP35499 NME4-207ENST00000450036 985 ntTSL 3 BASIC19.47■□□□□ 0.71
SCN4AP35499 KRT8P13-201ENST00000463294 1010 ntBASIC19.47■□□□□ 0.71
SCN4AP35499 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC19.47■□□□□ 0.71
SCN4AP35499 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.47■□□□□ 0.71
SCN4AP35499 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC19.47■□□□□ 0.71
SCN4AP35499 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.47■□□□□ 0.71
SCN4AP35499 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SCN4AP35499 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SCN4AP35499 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SCN4AP35499 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SCN4AP35499 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.46■□□□□ 0.71
SCN4AP35499 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
SCN4AP35499 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SCN4AP35499 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC19.46■□□□□ 0.71
SCN4AP35499 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC19.46■□□□□ 0.71
SCN4AP35499 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC19.46■□□□□ 0.71
SCN4AP35499 AC133539.2-201ENST00000604757 467 ntBASIC19.46■□□□□ 0.71
SCN4AP35499 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN4AP35499 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
SCN4AP35499 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SCN4AP35499 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN4AP35499 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC19.46■□□□□ 0.71
SCN4AP35499 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.46■□□□□ 0.71
SCN4AP35499 AC093503.3-201ENST00000624917 2352 ntBASIC19.46■□□□□ 0.71
SCN4AP35499 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SCN4AP35499 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN4AP35499 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN4AP35499 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SCN4AP35499 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN4AP35499 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN4AP35499 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SCN4AP35499 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN4AP35499 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN4AP35499 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN4AP35499 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC19.46■□□□□ 0.71
SCN4AP35499 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC19.46■□□□□ 0.71
SCN4AP35499 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN4AP35499 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC19.46■□□□□ 0.71
SCN4AP35499 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
SCN4AP35499 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC19.46■□□□□ 0.71
SCN4AP35499 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SCN4AP35499 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.46■□□□□ 0.71
SCN4AP35499 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.46■□□□□ 0.71
SCN4AP35499 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SCN4AP35499 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SCN4AP35499 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SCN4AP35499 AL671710.1-201ENST00000610245 2349 ntBASIC19.45■□□□□ 0.7
SCN4AP35499 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SCN4AP35499 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC19.45■□□□□ 0.7
SCN4AP35499 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SCN4AP35499 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SCN4AP35499 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms