Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.36■□□□□ 0.53
COL6A1P12109 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.36■□□□□ 0.53
COL6A1P12109 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A1P12109 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
COL6A1P12109 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL6A1P12109 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A1P12109 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.36■□□□□ 0.53
COL6A1P12109 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A1P12109 MIR4538-201ENST00000581377 78 ntBASIC18.36■□□□□ 0.53
COL6A1P12109 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL6A1P12109 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
COL6A1P12109 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A1P12109 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A1P12109 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.36■□□□□ 0.53
COL6A1P12109 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL6A1P12109 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A1P12109 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A1P12109 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A1P12109 AC012317.2-201ENST00000623305 2251 ntBASIC18.35■□□□□ 0.53
COL6A1P12109 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A1P12109 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A1P12109 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A1P12109 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL6A1P12109 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 KRT8P49-201ENST00000604166 1432 ntBASIC18.35■□□□□ 0.53
COL6A1P12109 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A1P12109 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL6A1P12109 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A1P12109 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.35■□□□□ 0.53
COL6A1P12109 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.35■□□□□ 0.53
COL6A1P12109 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A1P12109 BCL2-203ENST00000589955 5011 ntBASIC18.35■□□□□ 0.53
COL6A1P12109 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL6A1P12109 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
COL6A1P12109 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A1P12109 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
COL6A1P12109 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
COL6A1P12109 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.34■□□□□ 0.53
COL6A1P12109 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 ANKRD19P-201ENST00000338192 862 ntBASIC18.34■□□□□ 0.53
COL6A1P12109 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
COL6A1P12109 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.34■□□□□ 0.53
COL6A1P12109 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 MEP1AP4-201ENST00000423244 1087 ntBASIC18.34■□□□□ 0.53
COL6A1P12109 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
COL6A1P12109 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.34■□□□□ 0.53
COL6A1P12109 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.34■□□□□ 0.53
COL6A1P12109 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18.34■□□□□ 0.53
COL6A1P12109 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
COL6A1P12109 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.34■□□□□ 0.53
COL6A1P12109 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A1P12109 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A1P12109 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL6A1P12109 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A1P12109 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A1P12109 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A1P12109 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A1P12109 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A1P12109 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A1P12109 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.33■□□□□ 0.53
COL6A1P12109 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms