Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC007064.4-201ENST00000637740 555 ntBASIC15.8■□□□□ 0.12
LDB3O75112 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.8■□□□□ 0.12
LDB3O75112 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB3O75112 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB3O75112 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB3O75112 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB3O75112 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
LDB3O75112 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
LDB3O75112 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
LDB3O75112 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
LDB3O75112 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.79■□□□□ 0.12
LDB3O75112 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
LDB3O75112 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
LDB3O75112 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
LDB3O75112 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.79■□□□□ 0.12
LDB3O75112 AC023274.1-201ENST00000418278 595 ntBASIC15.79■□□□□ 0.12
LDB3O75112 HCG4-201ENST00000418983 998 ntBASIC15.79■□□□□ 0.12
LDB3O75112 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.79■□□□□ 0.12
LDB3O75112 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.79■□□□□ 0.12
LDB3O75112 MIR4515-201ENST00000584082 81 ntBASIC15.79■□□□□ 0.12
LDB3O75112 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
LDB3O75112 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.79■□□□□ 0.12
LDB3O75112 AC013467.2-201ENST00000605472 835 ntBASIC15.79■□□□□ 0.12
LDB3O75112 AL513190.1-201ENST00000621254 727 ntBASIC15.79■□□□□ 0.12
LDB3O75112 AC092865.6-201ENST00000642101 219 ntBASIC15.79■□□□□ 0.12
LDB3O75112 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
LDB3O75112 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
LDB3O75112 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LDB3O75112 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
LDB3O75112 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.78■□□□□ 0.12
LDB3O75112 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.78■□□□□ 0.12
LDB3O75112 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LDB3O75112 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LDB3O75112 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LDB3O75112 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
LDB3O75112 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.78■□□□□ 0.12
LDB3O75112 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LDB3O75112 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.78■□□□□ 0.12
LDB3O75112 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.78■□□□□ 0.12
LDB3O75112 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.78■□□□□ 0.12
LDB3O75112 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.78■□□□□ 0.12
LDB3O75112 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.78■□□□□ 0.12
LDB3O75112 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.78■□□□□ 0.12
LDB3O75112 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
LDB3O75112 KRT19P2-202ENST00000557173 1012 ntBASIC15.78■□□□□ 0.12
LDB3O75112 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LDB3O75112 AP001350.2-201ENST00000625104 1094 ntBASIC15.78■□□□□ 0.12
LDB3O75112 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.78■□□□□ 0.12
LDB3O75112 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.78■□□□□ 0.12
LDB3O75112 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.78■□□□□ 0.12
LDB3O75112 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.78■□□□□ 0.12
LDB3O75112 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.78■□□□□ 0.12
LDB3O75112 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LDB3O75112 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.12
LDB3O75112 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms