Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 AC108860.2-201ENST00000562760 2183 ntBASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 AL671710.1-201ENST00000610245 2349 ntBASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF541Q9H0D2 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 HAUS4P1-201ENST00000406739 1145 ntBASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 PARP8-218ENST00000513738 596 ntTSL 4 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 FADS2-205ENST00000517839 469 ntTSL 3 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 RN7SL219P-201ENST00000582872 296 ntBASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 MIR6869-201ENST00000619434 62 ntBASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 NOC2LP1-202ENST00000452600 2235 ntBASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF541Q9H0D2 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 AC092933.1-201ENST00000393644 945 ntBASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 USP32P1-208ENST00000506594 1164 ntBASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 RPS24-214ENST00000613865 538 ntTSL 5 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC19.86■□□□□ 0.77
ZNF541Q9H0D2 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 BOLA2P3-201ENST00000404566 256 ntBASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 RAD18-204ENST00000418463 563 ntTSL 4 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 RAD18-205ENST00000421052 582 ntTSL 3 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 AL033527.5-201ENST00000641382 801 ntBASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 CDC14C-201ENST00000428251 1719 ntBASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF541Q9H0D2 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms