Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LIMK1P53667 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.57■□□□□ 0.24
LIMK1P53667 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LIMK1P53667 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.57■□□□□ 0.24
LIMK1P53667 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.57■□□□□ 0.24
LIMK1P53667 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 AC106886.1-201ENST00000568660 600 ntBASIC16.57■□□□□ 0.24
LIMK1P53667 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.57■□□□□ 0.24
LIMK1P53667 MIR6805-201ENST00000615055 62 ntBASIC16.57■□□□□ 0.24
LIMK1P53667 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 NKILA-202ENST00000614771 2598 ntBASIC16.57■□□□□ 0.24
LIMK1P53667 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
LIMK1P53667 REXO1L9P-201ENST00000604264 2108 ntBASIC16.57■□□□□ 0.24
LIMK1P53667 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
LIMK1P53667 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.56■□□□□ 0.24
LIMK1P53667 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.56■□□□□ 0.24
LIMK1P53667 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
LIMK1P53667 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.56■□□□□ 0.24
LIMK1P53667 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.56■□□□□ 0.24
LIMK1P53667 AC140912.1-201ENST00000577171 1054 ntBASIC16.56■□□□□ 0.24
LIMK1P53667 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.56■□□□□ 0.24
LIMK1P53667 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
LIMK1P53667 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
LIMK1P53667 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.56■□□□□ 0.24
LIMK1P53667 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.56■□□□□ 0.24
LIMK1P53667 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LIMK1P53667 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LIMK1P53667 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIMK1P53667 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.56■□□□□ 0.24
LIMK1P53667 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.55■□□□□ 0.24
LIMK1P53667 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.55■□□□□ 0.24
LIMK1P53667 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LIMK1P53667 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.55■□□□□ 0.24
LIMK1P53667 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.55■□□□□ 0.24
LIMK1P53667 AC005412.3-201ENST00000580309 715 ntBASIC16.55■□□□□ 0.24
LIMK1P53667 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.55■□□□□ 0.24
LIMK1P53667 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 AC011676.5-201ENST00000624864 2660 ntBASIC16.55■□□□□ 0.24
LIMK1P53667 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.55■□□□□ 0.24
LIMK1P53667 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.55■□□□□ 0.24
LIMK1P53667 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.55■□□□□ 0.24
LIMK1P53667 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
LIMK1P53667 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIMK1P53667 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.54■□□□□ 0.24
LIMK1P53667 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LIMK1P53667 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIMK1P53667 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
LIMK1P53667 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
LIMK1P53667 AP001094.4-201ENST00000579008 2176 ntBASIC16.54■□□□□ 0.24
LIMK1P53667 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
LIMK1P53667 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.54■□□□□ 0.24
LIMK1P53667 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIMK1P53667 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.54■□□□□ 0.24
LIMK1P53667 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIMK1P53667 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.54■□□□□ 0.24
LIMK1P53667 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.54■□□□□ 0.24
LIMK1P53667 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIMK1P53667 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.54■□□□□ 0.24
LIMK1P53667 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
LIMK1P53667 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIMK1P53667 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms