Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 AC141586.5-201ENST00000624546 2050 ntBASIC19.73■□□□□ 0.75
HLA-DOAP06340 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 MIR943-201ENST00000401286 94 ntBASIC19.73■□□□□ 0.75
HLA-DOAP06340 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 AC093214.1-201ENST00000511688 1107 ntBASIC19.73■□□□□ 0.75
HLA-DOAP06340 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 BAD-207ENST00000544785 525 ntTSL 3 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
HLA-DOAP06340 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DOAP06340 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 RNA5SP421-201ENST00000516864 134 ntBASIC19.72■□□□□ 0.75
HLA-DOAP06340 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 AL390955.2-201ENST00000603032 514 ntBASIC19.72■□□□□ 0.75
HLA-DOAP06340 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HLA-DOAP06340 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DOAP06340 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 AC140878.1-201ENST00000565277 250 ntBASIC19.71■□□□□ 0.75
HLA-DOAP06340 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DOAP06340 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
HLA-DOAP06340 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.71■□□□□ 0.74
HLA-DOAP06340 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms