Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.22■□□□□ 0.19
SLC28A1O00337 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.22■□□□□ 0.19
SLC28A1O00337 PAWRP1-201ENST00000451083 565 ntBASIC16.22■□□□□ 0.19
SLC28A1O00337 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.22■□□□□ 0.19
SLC28A1O00337 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.22■□□□□ 0.19
SLC28A1O00337 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.22■□□□□ 0.19
SLC28A1O00337 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.22■□□□□ 0.19
SLC28A1O00337 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.22■□□□□ 0.19
SLC28A1O00337 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.22■□□□□ 0.19
SLC28A1O00337 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.22■□□□□ 0.19
SLC28A1O00337 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.22■□□□□ 0.19
SLC28A1O00337 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
SLC28A1O00337 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SLC28A1O00337 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SLC28A1O00337 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SLC28A1O00337 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.21■□□□□ 0.19
SLC28A1O00337 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.21■□□□□ 0.19
SLC28A1O00337 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.21■□□□□ 0.19
SLC28A1O00337 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SLC28A1O00337 AL445228.2-201ENST00000605589 952 ntBASIC16.21■□□□□ 0.19
SLC28A1O00337 AL121772.3-201ENST00000610840 674 ntBASIC16.21■□□□□ 0.19
SLC28A1O00337 AL355877.3-201ENST00000622820 899 ntBASIC16.21■□□□□ 0.19
SLC28A1O00337 AF228730.7-201ENST00000641842 219 ntBASIC16.21■□□□□ 0.19
SLC28A1O00337 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.21■□□□□ 0.19
SLC28A1O00337 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.21■□□□□ 0.19
SLC28A1O00337 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SLC28A1O00337 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.21■□□□□ 0.19
SLC28A1O00337 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SLC28A1O00337 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.21■□□□□ 0.19
SLC28A1O00337 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SLC28A1O00337 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SLC28A1O00337 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.18
SLC28A1O00337 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
SLC28A1O00337 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SLC28A1O00337 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.2■□□□□ 0.18
SLC28A1O00337 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SLC28A1O00337 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.2■□□□□ 0.18
SLC28A1O00337 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 AC092364.2-201ENST00000596710 2692 ntBASIC16.2■□□□□ 0.18
SLC28A1O00337 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.2■□□□□ 0.18
SLC28A1O00337 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.2■□□□□ 0.18
SLC28A1O00337 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.2■□□□□ 0.18
SLC28A1O00337 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.2■□□□□ 0.18
SLC28A1O00337 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.2■□□□□ 0.18
SLC28A1O00337 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 MIR3652-201ENST00000579335 131 ntBASIC16.2■□□□□ 0.18
SLC28A1O00337 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
SLC28A1O00337 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.2■□□□□ 0.18
SLC28A1O00337 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
SLC28A1O00337 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms