Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.52■□□□□ 0.56
PEX3P56589 OR6D1P-203ENST00000641209 4860 ntBASIC18.52■□□□□ 0.56
PEX3P56589 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.52■□□□□ 0.56
PEX3P56589 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PEX3P56589 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.52■□□□□ 0.56
PEX3P56589 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
PEX3P56589 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PEX3P56589 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.52■□□□□ 0.56
PEX3P56589 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.52■□□□□ 0.56
PEX3P56589 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.52■□□□□ 0.56
PEX3P56589 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.52■□□□□ 0.56
PEX3P56589 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.52■□□□□ 0.56
PEX3P56589 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 AC010327.4-202ENST00000591484 748 ntBASIC18.52■□□□□ 0.56
PEX3P56589 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.52■□□□□ 0.56
PEX3P56589 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.52■□□□□ 0.56
PEX3P56589 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.52■□□□□ 0.56
PEX3P56589 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
PEX3P56589 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PEX3P56589 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PEX3P56589 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PEX3P56589 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.52■□□□□ 0.55
PEX3P56589 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
PEX3P56589 AC078925.2-201ENST00000624013 1973 ntBASIC18.51■□□□□ 0.55
PEX3P56589 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
PEX3P56589 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
PEX3P56589 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.51■□□□□ 0.55
PEX3P56589 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.51■□□□□ 0.55
PEX3P56589 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.51■□□□□ 0.55
PEX3P56589 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.51■□□□□ 0.55
PEX3P56589 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
PEX3P56589 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.51■□□□□ 0.55
PEX3P56589 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 DNAJB3-201ENST00000446806 729 ntBASIC18.51■□□□□ 0.55
PEX3P56589 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.51■□□□□ 0.55
PEX3P56589 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.51■□□□□ 0.55
PEX3P56589 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.51■□□□□ 0.55
PEX3P56589 AP002472.1-201ENST00000577490 586 ntBASIC18.51■□□□□ 0.55
PEX3P56589 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.51■□□□□ 0.55
PEX3P56589 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 AL603756.1-201ENST00000606511 2163 ntBASIC18.51■□□□□ 0.55
PEX3P56589 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PEX3P56589 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PEX3P56589 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PEX3P56589 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.5■□□□□ 0.55
PEX3P56589 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
PEX3P56589 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.5■□□□□ 0.55
PEX3P56589 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PEX3P56589 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.5■□□□□ 0.55
PEX3P56589 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
PEX3P56589 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.5■□□□□ 0.55
PEX3P56589 KRT18P13-201ENST00000400056 1290 ntBASIC18.5■□□□□ 0.55
PEX3P56589 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.5■□□□□ 0.55
PEX3P56589 AC140658.5-201ENST00000438532 169 ntBASIC18.5■□□□□ 0.55
PEX3P56589 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.5■□□□□ 0.55
PEX3P56589 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.5■□□□□ 0.55
PEX3P56589 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.5■□□□□ 0.55
PEX3P56589 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.5■□□□□ 0.55
PEX3P56589 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.5■□□□□ 0.55
PEX3P56589 AL078644.1-201ENST00000609881 752 ntBASIC18.5■□□□□ 0.55
PEX3P56589 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PEX3P56589 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms