Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
BRCA1P38398 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC20.1■□□□□ 0.81
BRCA1P38398 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC20.1■□□□□ 0.81
BRCA1P38398 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC20.1■□□□□ 0.81
BRCA1P38398 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC20.1■□□□□ 0.81
BRCA1P38398 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
BRCA1P38398 MIR3615-201ENST00000581999 87 ntBASIC20.1■□□□□ 0.81
BRCA1P38398 AL022328.1-201ENST00000610050 478 ntBASIC20.1■□□□□ 0.81
BRCA1P38398 ABBA01031660.1-201ENST00000635219 756 ntBASIC20.1■□□□□ 0.81
BRCA1P38398 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.1■□□□□ 0.81
BRCA1P38398 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BRCA1P38398 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
BRCA1P38398 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC20.1■□□□□ 0.81
BRCA1P38398 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
BRCA1P38398 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
BRCA1P38398 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
BRCA1P38398 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
BRCA1P38398 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.1■□□□□ 0.81
BRCA1P38398 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
BRCA1P38398 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BRCA1P38398 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC20.09■□□□□ 0.81
BRCA1P38398 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC20.09■□□□□ 0.81
BRCA1P38398 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC20.09■□□□□ 0.81
BRCA1P38398 AC013467.2-201ENST00000605472 835 ntBASIC20.09■□□□□ 0.81
BRCA1P38398 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BRCA1P38398 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.09■□□□□ 0.81
BRCA1P38398 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.09■□□□□ 0.81
BRCA1P38398 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.09■□□□□ 0.81
BRCA1P38398 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
BRCA1P38398 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.09■□□□□ 0.81
BRCA1P38398 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
BRCA1P38398 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.09■□□□□ 0.81
BRCA1P38398 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC20.09■□□□□ 0.81
BRCA1P38398 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC20.09■□□□□ 0.81
BRCA1P38398 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BRCA1P38398 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
BRCA1P38398 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
BRCA1P38398 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC20.09■□□□□ 0.81
BRCA1P38398 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
BRCA1P38398 AC007551.1-201ENST00000457394 519 ntBASIC20.09■□□□□ 0.81
BRCA1P38398 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC20.09■□□□□ 0.81
BRCA1P38398 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.09■□□□□ 0.81
BRCA1P38398 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
BRCA1P38398 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRCA1P38398 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRCA1P38398 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
BRCA1P38398 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRCA1P38398 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC20.08■□□□□ 0.81
BRCA1P38398 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC20.08■□□□□ 0.81
BRCA1P38398 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC20.08■□□□□ 0.81
BRCA1P38398 BTNL10-201ENST00000595971 695 ntBASIC20.08■□□□□ 0.81
BRCA1P38398 AC026979.3-201ENST00000607315 403 ntBASIC20.08■□□□□ 0.81
BRCA1P38398 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
BRCA1P38398 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
BRCA1P38398 HNRNPA1P48-201ENST00000562726 1377 ntBASIC20.08■□□□□ 0.8
BRCA1P38398 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
BRCA1P38398 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC20.08■□□□□ 0.8
BRCA1P38398 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC20.07■□□□□ 0.8
BRCA1P38398 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC20.07■□□□□ 0.8
BRCA1P38398 AC124283.3-201ENST00000570869 594 ntBASIC20.07■□□□□ 0.8
BRCA1P38398 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.07■□□□□ 0.8
BRCA1P38398 AC090164.3-201ENST00000610780 2143 ntBASIC20.07■□□□□ 0.8
BRCA1P38398 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
BRCA1P38398 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.07■□□□□ 0.8
BRCA1P38398 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.07■□□□□ 0.8
BRCA1P38398 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC20.07■□□□□ 0.8
BRCA1P38398 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 RPL28-203ENST00000428193 573 ntTSL 2 BASIC20.07■□□□□ 0.8
BRCA1P38398 PFN1P12-201ENST00000455938 534 ntBASIC20.07■□□□□ 0.8
BRCA1P38398 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC20.07■□□□□ 0.8
BRCA1P38398 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
BRCA1P38398 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC20.07■□□□□ 0.8
BRCA1P38398 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
BRCA1P38398 RPL28-207ENST00000558815 616 ntTSL 2 BASIC20.07■□□□□ 0.8
BRCA1P38398 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC20.07■□□□□ 0.8
BRCA1P38398 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC20.07■□□□□ 0.8
BRCA1P38398 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.07■□□□□ 0.8
BRCA1P38398 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
BRCA1P38398 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.06■□□□□ 0.8
BRCA1P38398 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.06■□□□□ 0.8
BRCA1P38398 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
BRCA1P38398 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 GZMB-202ENST00000382540 816 ntTSL 5 BASIC20.06■□□□□ 0.8
BRCA1P38398 MIR663B-201ENST00000408361 115 ntBASIC20.06■□□□□ 0.8
BRCA1P38398 SLC25A47P1-201ENST00000531577 414 ntBASIC20.06■□□□□ 0.8
BRCA1P38398 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRCA1P38398 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms