Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.4□□□□□ -0.1
SDCBPO00560 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.11
SDCBPO00560 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SDCBPO00560 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.39□□□□□ -0.11
SDCBPO00560 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 ARMC10P1-201ENST00000313754 855 ntBASIC14.39□□□□□ -0.11
SDCBPO00560 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 ENSA-206ENST00000361631 725 ntTSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC14.39□□□□□ -0.11
SDCBPO00560 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 KRT17P6-201ENST00000453795 1220 ntBASIC14.39□□□□□ -0.11
SDCBPO00560 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC14.39□□□□□ -0.11
SDCBPO00560 AC096582.2-201ENST00000510860 516 ntBASIC14.39□□□□□ -0.11
SDCBPO00560 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 AP005901.3-202ENST00000581653 237 ntBASIC14.39□□□□□ -0.11
SDCBPO00560 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
SDCBPO00560 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC14.39□□□□□ -0.11
SDCBPO00560 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SDCBPO00560 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SDCBPO00560 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.39□□□□□ -0.11
SDCBPO00560 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 FRMD8P1-201ENST00000440433 1524 ntBASIC14.39□□□□□ -0.11
SDCBPO00560 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.39□□□□□ -0.11
SDCBPO00560 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SDCBPO00560 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.39□□□□□ -0.11
SDCBPO00560 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
SDCBPO00560 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
SDCBPO00560 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SDCBPO00560 ALOX12P2-203ENST00000570921 1945 ntBASIC14.39□□□□□ -0.11
SDCBPO00560 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 TP73-AS1-210ENST00000637775 1455 ntBASIC14.38□□□□□ -0.11
SDCBPO00560 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
SDCBPO00560 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC14.38□□□□□ -0.11
SDCBPO00560 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
SDCBPO00560 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
SDCBPO00560 AP002383.4-201ENST00000442518 975 ntBASIC14.38□□□□□ -0.11
SDCBPO00560 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC14.38□□□□□ -0.11
SDCBPO00560 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC14.38□□□□□ -0.11
SDCBPO00560 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC14.38□□□□□ -0.11
SDCBPO00560 AC074051.2-201ENST00000565115 352 ntBASIC14.38□□□□□ -0.11
SDCBPO00560 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
SDCBPO00560 AC011467.2-201ENST00000598425 242 ntBASIC14.38□□□□□ -0.11
SDCBPO00560 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SDCBPO00560 AC091076.1-201ENST00000610741 619 ntBASIC14.38□□□□□ -0.11
SDCBPO00560 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.38□□□□□ -0.11
SDCBPO00560 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 KRT8P10-201ENST00000450021 1447 ntBASIC14.38□□□□□ -0.11
SDCBPO00560 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.38□□□□□ -0.11
SDCBPO00560 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
SDCBPO00560 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 AL049757.1-201ENST00000616842 1596 ntBASIC14.38□□□□□ -0.11
SDCBPO00560 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDCBPO00560 AL391256.1-201ENST00000443260 1855 ntBASIC14.38□□□□□ -0.11
SDCBPO00560 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.38□□□□□ -0.11
SDCBPO00560 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC14.38□□□□□ -0.11
SDCBPO00560 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDCBPO00560 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms