Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PTPN9P43378 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PTPN9P43378 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 AC084018.2-201ENST00000613093 2607 ntBASIC17.5■□□□□ 0.39
PTPN9P43378 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.5■□□□□ 0.39
PTPN9P43378 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PTPN9P43378 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.5■□□□□ 0.39
PTPN9P43378 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 SLC25A1P1-201ENST00000528351 927 ntBASIC17.5■□□□□ 0.39
PTPN9P43378 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.5■□□□□ 0.39
PTPN9P43378 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.5■□□□□ 0.39
PTPN9P43378 AC120114.3-201ENST00000611923 658 ntBASIC17.5■□□□□ 0.39
PTPN9P43378 AL645728.2-201ENST00000641974 660 ntBASIC17.5■□□□□ 0.39
PTPN9P43378 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.5■□□□□ 0.39
PTPN9P43378 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.5■□□□□ 0.39
PTPN9P43378 AC092171.3-201ENST00000610122 2651 ntBASIC17.5■□□□□ 0.39
PTPN9P43378 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PTPN9P43378 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
PTPN9P43378 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PTPN9P43378 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN9P43378 AL512652.2-201ENST00000625156 1716 ntBASIC17.5■□□□□ 0.39
PTPN9P43378 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN9P43378 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
PTPN9P43378 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN9P43378 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN9P43378 PCDHA14-201ENST00000506751 2298 ntBASIC17.49■□□□□ 0.39
PTPN9P43378 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN9P43378 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.49■□□□□ 0.39
PTPN9P43378 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.49■□□□□ 0.39
PTPN9P43378 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
PTPN9P43378 AL513480.1-201ENST00000451731 511 ntBASIC17.49■□□□□ 0.39
PTPN9P43378 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
PTPN9P43378 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.49■□□□□ 0.39
PTPN9P43378 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.49■□□□□ 0.39
PTPN9P43378 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.49■□□□□ 0.39
PTPN9P43378 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN9P43378 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.49■□□□□ 0.39
PTPN9P43378 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.49■□□□□ 0.39
PTPN9P43378 AC064836.3-201ENST00000607928 673 ntBASIC17.49■□□□□ 0.39
PTPN9P43378 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.49■□□□□ 0.39
PTPN9P43378 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
PTPN9P43378 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN9P43378 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.49■□□□□ 0.39
PTPN9P43378 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN9P43378 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN9P43378 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.49■□□□□ 0.39
PTPN9P43378 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.49■□□□□ 0.39
PTPN9P43378 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.48■□□□□ 0.39
PTPN9P43378 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PTPN9P43378 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.48■□□□□ 0.39
PTPN9P43378 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.48■□□□□ 0.39
PTPN9P43378 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.48■□□□□ 0.39
PTPN9P43378 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.48■□□□□ 0.39
PTPN9P43378 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.48■□□□□ 0.39
PTPN9P43378 AL031432.2-201ENST00000566714 459 ntBASIC17.48■□□□□ 0.39
PTPN9P43378 AC106730.1-201ENST00000566722 1090 ntBASIC17.48■□□□□ 0.39
PTPN9P43378 AL928711.1-201ENST00000570165 459 ntBASIC17.48■□□□□ 0.39
PTPN9P43378 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.48■□□□□ 0.39
PTPN9P43378 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 ZNF259P1-201ENST00000407656 1365 ntBASIC17.48■□□□□ 0.39
PTPN9P43378 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms