Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.32■□□□□ 0.36
TOP3BO95985 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
TOP3BO95985 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.32■□□□□ 0.36
TOP3BO95985 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.32■□□□□ 0.36
TOP3BO95985 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TOP3BO95985 AL139288.1-201ENST00000623748 933 ntBASIC17.32■□□□□ 0.36
TOP3BO95985 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.32■□□□□ 0.36
TOP3BO95985 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.32■□□□□ 0.36
TOP3BO95985 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
TOP3BO95985 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.32■□□□□ 0.36
TOP3BO95985 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TOP3BO95985 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.31■□□□□ 0.36
TOP3BO95985 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TOP3BO95985 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.31■□□□□ 0.36
TOP3BO95985 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TOP3BO95985 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TOP3BO95985 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
TOP3BO95985 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.31■□□□□ 0.36
TOP3BO95985 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.31■□□□□ 0.36
TOP3BO95985 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.31■□□□□ 0.36
TOP3BO95985 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.31■□□□□ 0.36
TOP3BO95985 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.31■□□□□ 0.36
TOP3BO95985 AC027612.4-201ENST00000605371 583 ntBASIC17.31■□□□□ 0.36
TOP3BO95985 AC019129.2-201ENST00000609837 1235 ntBASIC17.31■□□□□ 0.36
TOP3BO95985 AL078644.1-201ENST00000609881 752 ntBASIC17.31■□□□□ 0.36
TOP3BO95985 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.31■□□□□ 0.36
TOP3BO95985 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.31■□□□□ 0.36
TOP3BO95985 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 CICP6-201ENST00000457191 2729 ntBASIC17.31■□□□□ 0.36
TOP3BO95985 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.31■□□□□ 0.36
TOP3BO95985 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TOP3BO95985 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.3■□□□□ 0.36
TOP3BO95985 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
TOP3BO95985 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TOP3BO95985 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TOP3BO95985 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 LINC02199-201ENST00000506655 2702 ntBASIC17.3■□□□□ 0.36
TOP3BO95985 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TOP3BO95985 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TOP3BO95985 AC002558.1-201ENST00000488906 803 ntBASIC17.3■□□□□ 0.36
TOP3BO95985 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.3■□□□□ 0.36
TOP3BO95985 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.3■□□□□ 0.36
TOP3BO95985 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.3■□□□□ 0.36
TOP3BO95985 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.3■□□□□ 0.36
TOP3BO95985 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TOP3BO95985 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.3■□□□□ 0.36
TOP3BO95985 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.3■□□□□ 0.36
TOP3BO95985 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.3■□□□□ 0.36
TOP3BO95985 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.3■□□□□ 0.36
TOP3BO95985 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TOP3BO95985 AL662844.4-201ENST00000606367 2838 ntBASIC17.29■□□□□ 0.36
TOP3BO95985 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TOP3BO95985 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TOP3BO95985 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TOP3BO95985 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms