Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.95■□□□□ 0.62
CIITAP33076 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.95■□□□□ 0.62
CIITAP33076 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.95■□□□□ 0.62
CIITAP33076 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.95■□□□□ 0.62
CIITAP33076 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.95■□□□□ 0.62
CIITAP33076 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
CIITAP33076 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.95■□□□□ 0.62
CIITAP33076 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.95■□□□□ 0.62
CIITAP33076 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
CIITAP33076 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.95■□□□□ 0.62
CIITAP33076 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.95■□□□□ 0.62
CIITAP33076 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.95■□□□□ 0.62
CIITAP33076 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
CIITAP33076 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.95■□□□□ 0.62
CIITAP33076 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.95■□□□□ 0.62
CIITAP33076 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
CIITAP33076 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.95■□□□□ 0.62
CIITAP33076 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CIITAP33076 AC022211.2-201ENST00000585075 2527 ntBASIC18.95■□□□□ 0.62
CIITAP33076 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 AC012313.1-201ENST00000593393 3059 ntBASIC18.94■□□□□ 0.62
CIITAP33076 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.94■□□□□ 0.62
CIITAP33076 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.94■□□□□ 0.62
CIITAP33076 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 AC078925.2-201ENST00000624013 1973 ntBASIC18.94■□□□□ 0.62
CIITAP33076 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.94■□□□□ 0.62
CIITAP33076 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.94■□□□□ 0.62
CIITAP33076 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.94■□□□□ 0.62
CIITAP33076 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.94■□□□□ 0.62
CIITAP33076 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.94■□□□□ 0.62
CIITAP33076 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CIITAP33076 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.94■□□□□ 0.62
CIITAP33076 AC021097.1-201ENST00000607902 574 ntBASIC18.94■□□□□ 0.62
CIITAP33076 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 AL161645.1-201ENST00000622716 1255 ntBASIC18.94■□□□□ 0.62
CIITAP33076 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.94■□□□□ 0.62
CIITAP33076 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.94■□□□□ 0.62
CIITAP33076 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CIITAP33076 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CIITAP33076 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.94■□□□□ 0.62
CIITAP33076 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CIITAP33076 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CIITAP33076 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.93■□□□□ 0.62
CIITAP33076 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.93■□□□□ 0.62
CIITAP33076 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.93■□□□□ 0.62
CIITAP33076 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.93■□□□□ 0.62
CIITAP33076 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.93■□□□□ 0.62
CIITAP33076 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.93■□□□□ 0.62
CIITAP33076 AL355306.1-201ENST00000415580 579 ntBASIC18.93■□□□□ 0.62
CIITAP33076 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.93■□□□□ 0.62
CIITAP33076 AP006288.1-201ENST00000446065 395 ntBASIC18.93■□□□□ 0.62
CIITAP33076 CEND1P1-201ENST00000451006 455 ntBASIC18.93■□□□□ 0.62
CIITAP33076 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.93■□□□□ 0.62
CIITAP33076 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.93■□□□□ 0.62
CIITAP33076 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CIITAP33076 GPALPP1-207ENST00000611650 899 ntBASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms