Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 AC098859.1-201ENST00000502915 1238 ntBASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.01■□□□□ 0.79
ZNF541Q9H0D2 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ZNF541Q9H0D2 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC20■□□□□ 0.79
ZNF541Q9H0D2 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ZNF541Q9H0D2 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20■□□□□ 0.79
ZNF541Q9H0D2 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
ZNF541Q9H0D2 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC20■□□□□ 0.79
ZNF541Q9H0D2 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF541Q9H0D2 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20■□□□□ 0.79
ZNF541Q9H0D2 TPRX2P-201ENST00000535362 881 ntBASIC20■□□□□ 0.79
ZNF541Q9H0D2 AC123567.1-201ENST00000548294 1261 ntBASIC20■□□□□ 0.79
ZNF541Q9H0D2 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20■□□□□ 0.79
ZNF541Q9H0D2 GPR182-203ENST00000622922 591 ntBASIC20■□□□□ 0.79
ZNF541Q9H0D2 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 AC008735.3-201ENST00000596646 500 ntBASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 AC004461.2-201ENST00000629517 803 ntBASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF541Q9H0D2 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 AL355312.1-201ENST00000407115 2176 ntBASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 AC012317.2-201ENST00000623305 2251 ntBASIC19.98■□□□□ 0.79
ZNF541Q9H0D2 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.97■□□□□ 0.79
ZNF541Q9H0D2 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ZNF541Q9H0D2 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.97■□□□□ 0.79
ZNF541Q9H0D2 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ZNF541Q9H0D2 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ZNF541Q9H0D2 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms