Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE4Q8N205 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE4Q8N205 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.94■□□□□ 0.94
SYNE4Q8N205 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE4Q8N205 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE4Q8N205 FOXO1B-201ENST00000504678 1527 ntBASIC20.94■□□□□ 0.94
SYNE4Q8N205 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SYNE4Q8N205 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE4Q8N205 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE4Q8N205 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE4Q8N205 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE4Q8N205 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 COX11-202ENST00000571584 1108 ntTSL 2 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 MIR3909-201ENST00000579518 119 ntBASIC20.93■□□□□ 0.94
SYNE4Q8N205 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 HFE2-206ENST00000634927 506 ntTSL 4 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE4Q8N205 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNE4Q8N205 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.93■□□□□ 0.94
SYNE4Q8N205 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 AL512638.1-201ENST00000457493 794 ntBASIC20.92■□□□□ 0.94
SYNE4Q8N205 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
SYNE4Q8N205 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNE4Q8N205 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SYNE4Q8N205 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SYNE4Q8N205 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 AC142381.1-201ENST00000426099 345 ntBASIC20.91■□□□□ 0.94
SYNE4Q8N205 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SYNE4Q8N205 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SYNE4Q8N205 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
SYNE4Q8N205 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 AC141586.5-201ENST00000624546 2050 ntBASIC20.9■□□□□ 0.94
SYNE4Q8N205 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNE4Q8N205 AC106820.2-201ENST00000563775 3264 ntBASIC20.9■□□□□ 0.94
SYNE4Q8N205 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNE4Q8N205 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNE4Q8N205 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNE4Q8N205 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 GOLGA6L11P-201ENST00000417252 1298 ntBASIC20.9■□□□□ 0.94
SYNE4Q8N205 SPDYE7P-202ENST00000420373 878 ntBASIC20.9■□□□□ 0.94
SYNE4Q8N205 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 CDK2AP2P3-201ENST00000422476 372 ntBASIC20.9■□□□□ 0.94
SYNE4Q8N205 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms