Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh4Q99MT2 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Msh4Q99MT2 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Msh4Q99MT2 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Msh4Q99MT2 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh4Q99MT2 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Msh4Q99MT2 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Msh4Q99MT2 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
Msh4Q99MT2 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Msh4Q99MT2 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC21.08■□□□□ 0.97
Msh4Q99MT2 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msh4Q99MT2 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC21.08■□□□□ 0.97
Msh4Q99MT2 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Msh4Q99MT2 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh4Q99MT2 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh4Q99MT2 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.07■□□□□ 0.96
Msh4Q99MT2 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh4Q99MT2 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh4Q99MT2 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh4Q99MT2 AC164433.2-201ENSMUST00000226346 1701 ntBASIC21.07■□□□□ 0.96
Msh4Q99MT2 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Msh4Q99MT2 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh4Q99MT2 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh4Q99MT2 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh4Q99MT2 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Msh4Q99MT2 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Msh4Q99MT2 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Msh4Q99MT2 Gm10420-201ENSMUST00000121713 882 ntBASIC21.05■□□□□ 0.96
Msh4Q99MT2 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msh4Q99MT2 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Msh4Q99MT2 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Msh4Q99MT2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Msh4Q99MT2 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC21.04■□□□□ 0.96
Msh4Q99MT2 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Msh4Q99MT2 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msh4Q99MT2 Gm6934-201ENSMUST00000194780 1905 ntBASIC21.04■□□□□ 0.96
Msh4Q99MT2 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msh4Q99MT2 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Msh4Q99MT2 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Msh4Q99MT2 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC21.03■□□□□ 0.96
Msh4Q99MT2 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Msh4Q99MT2 Gm5067-201ENSMUST00000170449 1009 ntBASIC21.03■□□□□ 0.96
Msh4Q99MT2 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Msh4Q99MT2 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.03■□□□□ 0.96
Msh4Q99MT2 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Msh4Q99MT2 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Msh4Q99MT2 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Msh4Q99MT2 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Msh4Q99MT2 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Msh4Q99MT2 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Msh4Q99MT2 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Msh4Q99MT2 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Msh4Q99MT2 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Msh4Q99MT2 AC117769.4-201ENSMUST00000225679 685 ntBASIC21.01■□□□□ 0.95
Msh4Q99MT2 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Msh4Q99MT2 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC21.01■□□□□ 0.95
Msh4Q99MT2 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC21.01■□□□□ 0.95
Msh4Q99MT2 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC21.01■□□□□ 0.95
Msh4Q99MT2 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Msh4Q99MT2 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC21■□□□□ 0.95
Msh4Q99MT2 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Msh4Q99MT2 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Msh4Q99MT2 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Msh4Q99MT2 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh4Q99MT2 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Msh4Q99MT2 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Msh4Q99MT2 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.99■□□□□ 0.95
Msh4Q99MT2 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh4Q99MT2 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh4Q99MT2 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Msh4Q99MT2 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Msh4Q99MT2 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msh4Q99MT2 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Msh4Q99MT2 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh4Q99MT2 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh4Q99MT2 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Msh4Q99MT2 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh4Q99MT2 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh4Q99MT2 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Msh4Q99MT2 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.98■□□□□ 0.95
Msh4Q99MT2 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Msh4Q99MT2 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Msh4Q99MT2 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Msh4Q99MT2 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Msh4Q99MT2 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.97■□□□□ 0.95
Msh4Q99MT2 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Msh4Q99MT2 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Msh4Q99MT2 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.96■□□□□ 0.95
Msh4Q99MT2 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Msh4Q99MT2 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msh4Q99MT2 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Msh4Q99MT2 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msh4Q99MT2 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Msh4Q99MT2 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msh4Q99MT2 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Msh4Q99MT2 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Msh4Q99MT2 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Msh4Q99MT2 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Msh4Q99MT2 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.95■□□□□ 0.94
Msh4Q99MT2 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 221 ms