Protein–RNA interactions for Protein: A2AN08

Ubr4, E3 ubiquitin-protein ligase UBR4, mousemouse

Predictions only

Length 5,180 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr4A2AN08 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC12.07□□□□□ -0.48
Ubr4A2AN08 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ubr4A2AN08 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC12.06□□□□□ -0.48
Ubr4A2AN08 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ubr4A2AN08 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ubr4A2AN08 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ubr4A2AN08 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ubr4A2AN08 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Ubr4A2AN08 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC12.06□□□□□ -0.48
Ubr4A2AN08 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC12.06□□□□□ -0.48
Ubr4A2AN08 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ubr4A2AN08 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Ubr4A2AN08 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ubr4A2AN08 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ubr4A2AN08 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ubr4A2AN08 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC12.04□□□□□ -0.48
Ubr4A2AN08 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ubr4A2AN08 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ubr4A2AN08 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ubr4A2AN08 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ubr4A2AN08 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC12.03□□□□□ -0.48
Ubr4A2AN08 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ubr4A2AN08 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ubr4A2AN08 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC12.03□□□□□ -0.48
Ubr4A2AN08 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Ubr4A2AN08 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ubr4A2AN08 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ubr4A2AN08 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ubr4A2AN08 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ubr4A2AN08 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC12.02□□□□□ -0.49
Ubr4A2AN08 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ubr4A2AN08 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ubr4A2AN08 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ubr4A2AN08 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubr4A2AN08 Gm43017-201ENSMUST00000198296 752 ntBASIC12.01□□□□□ -0.49
Ubr4A2AN08 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC12.01□□□□□ -0.49
Ubr4A2AN08 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubr4A2AN08 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubr4A2AN08 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ubr4A2AN08 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ubr4A2AN08 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ubr4A2AN08 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ubr4A2AN08 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ubr4A2AN08 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC12□□□□□ -0.49
Ubr4A2AN08 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ubr4A2AN08 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ubr4A2AN08 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubr4A2AN08 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Ubr4A2AN08 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC11.99□□□□□ -0.49
Ubr4A2AN08 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubr4A2AN08 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC11.99□□□□□ -0.49
Ubr4A2AN08 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubr4A2AN08 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubr4A2AN08 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubr4A2AN08 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubr4A2AN08 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubr4A2AN08 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC11.98□□□□□ -0.49
Ubr4A2AN08 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC11.98□□□□□ -0.49
Ubr4A2AN08 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubr4A2AN08 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubr4A2AN08 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC11.98□□□□□ -0.49
Ubr4A2AN08 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubr4A2AN08 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubr4A2AN08 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC11.97□□□□□ -0.49
Ubr4A2AN08 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubr4A2AN08 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC11.97□□□□□ -0.49
Ubr4A2AN08 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC11.97□□□□□ -0.49
Ubr4A2AN08 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubr4A2AN08 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ubr4A2AN08 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubr4A2AN08 Gm9207-201ENSMUST00000198773 1115 ntBASIC11.97□□□□□ -0.49
Ubr4A2AN08 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubr4A2AN08 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ubr4A2AN08 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubr4A2AN08 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubr4A2AN08 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubr4A2AN08 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Ubr4A2AN08 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubr4A2AN08 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Ubr4A2AN08 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Ubr4A2AN08 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC11.96□□□□□ -0.5
Ubr4A2AN08 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
Ubr4A2AN08 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Ubr4A2AN08 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Ubr4A2AN08 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Ubr4A2AN08 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubr4A2AN08 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubr4A2AN08 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Ubr4A2AN08 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms