Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CDX2Q99626 AC073592.3-201ENST00000625118 1834 ntBASIC17.47■□□□□ 0.39
CDX2Q99626 AC073439.1-201ENST00000624121 1774 ntBASIC17.46■□□□□ 0.39
CDX2Q99626 EGFEM1P-202ENST00000431685 1563 ntBASIC17.46■□□□□ 0.39
CDX2Q99626 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDX2Q99626 KRT8P12-202ENST00000472924 1397 ntBASIC17.46■□□□□ 0.39
CDX2Q99626 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CDX2Q99626 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDX2Q99626 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDX2Q99626 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDX2Q99626 BTBD6P1-201ENST00000412176 1267 ntBASIC17.46■□□□□ 0.39
CDX2Q99626 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.46■□□□□ 0.39
CDX2Q99626 YBX1P6-201ENST00000442962 1002 ntBASIC17.46■□□□□ 0.39
CDX2Q99626 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.46■□□□□ 0.39
CDX2Q99626 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDX2Q99626 NEU3-202ENST00000526068 431 ntTSL 2 BASIC17.46■□□□□ 0.39
CDX2Q99626 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDX2Q99626 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.46■□□□□ 0.39
CDX2Q99626 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.46■□□□□ 0.39
CDX2Q99626 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.46■□□□□ 0.39
CDX2Q99626 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDX2Q99626 MIR4492-201ENST00000581627 80 ntBASIC17.46■□□□□ 0.39
CDX2Q99626 MPDU1-223ENST00000582151 728 ntBASIC17.46■□□□□ 0.39
CDX2Q99626 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.46■□□□□ 0.39
CDX2Q99626 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.46■□□□□ 0.39
CDX2Q99626 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CDX2Q99626 AC009542.2-202ENST00000619004 1067 ntBASIC17.46■□□□□ 0.39
CDX2Q99626 AC005332.7-201ENST00000614046 2005 ntBASIC17.46■□□□□ 0.39
CDX2Q99626 REXO1L11P-201ENST00000620964 1927 ntBASIC17.46■□□□□ 0.39
CDX2Q99626 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDX2Q99626 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.46■□□□□ 0.39
CDX2Q99626 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.46■□□□□ 0.39
CDX2Q99626 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CDX2Q99626 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.46■□□□□ 0.39
CDX2Q99626 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDX2Q99626 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDX2Q99626 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CDX2Q99626 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.45■□□□□ 0.38
CDX2Q99626 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.45■□□□□ 0.38
CDX2Q99626 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CDX2Q99626 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.45■□□□□ 0.38
CDX2Q99626 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.45■□□□□ 0.38
CDX2Q99626 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.45■□□□□ 0.38
CDX2Q99626 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.45■□□□□ 0.38
CDX2Q99626 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.45■□□□□ 0.38
CDX2Q99626 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CDX2Q99626 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.45■□□□□ 0.38
CDX2Q99626 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC17.45■□□□□ 0.38
CDX2Q99626 MIR5189-201ENST00000577370 114 ntBASIC17.45■□□□□ 0.38
CDX2Q99626 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.45■□□□□ 0.38
CDX2Q99626 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC17.45■□□□□ 0.38
CDX2Q99626 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CDX2Q99626 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
CDX2Q99626 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.45■□□□□ 0.38
CDX2Q99626 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CDX2Q99626 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.45■□□□□ 0.38
CDX2Q99626 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
CDX2Q99626 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDX2Q99626 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX2Q99626 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.44■□□□□ 0.38
CDX2Q99626 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX2Q99626 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX2Q99626 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.44■□□□□ 0.38
CDX2Q99626 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX2Q99626 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX2Q99626 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDX2Q99626 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.44■□□□□ 0.38
CDX2Q99626 NUS1P3-201ENST00000423502 862 ntBASIC17.44■□□□□ 0.38
CDX2Q99626 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.44■□□□□ 0.38
CDX2Q99626 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.44■□□□□ 0.38
CDX2Q99626 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.44■□□□□ 0.38
CDX2Q99626 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.44■□□□□ 0.38
CDX2Q99626 AP001889.1-201ENST00000525414 633 ntBASIC17.44■□□□□ 0.38
CDX2Q99626 TDH-203ENST00000531764 1110 ntBASIC17.44■□□□□ 0.38
CDX2Q99626 AP000812.2-201ENST00000538934 718 ntBASIC17.44■□□□□ 0.38
CDX2Q99626 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.44■□□□□ 0.38
CDX2Q99626 AC092337.1-201ENST00000568699 1129 ntBASIC17.44■□□□□ 0.38
CDX2Q99626 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.44■□□□□ 0.38
CDX2Q99626 RN7SL560P-201ENST00000577943 264 ntBASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms