Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL4A4P53420 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
COL4A4P53420 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.95■□□□□ 0.46
COL4A4P53420 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.95■□□□□ 0.46
COL4A4P53420 AC124947.2-201ENST00000547118 1133 ntBASIC17.95■□□□□ 0.46
COL4A4P53420 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.95■□□□□ 0.46
COL4A4P53420 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.95■□□□□ 0.46
COL4A4P53420 TEX28P1-201ENST00000613479 1221 ntBASIC17.95■□□□□ 0.46
COL4A4P53420 TEX28P2-201ENST00000617764 1221 ntBASIC17.95■□□□□ 0.46
COL4A4P53420 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
COL4A4P53420 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.95■□□□□ 0.46
COL4A4P53420 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.95■□□□□ 0.46
COL4A4P53420 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.95■□□□□ 0.46
COL4A4P53420 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A4P53420 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A4P53420 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL4A4P53420 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL4A4P53420 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A4P53420 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.94■□□□□ 0.46
COL4A4P53420 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL4A4P53420 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A4P53420 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A4P53420 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.94■□□□□ 0.46
COL4A4P53420 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.94■□□□□ 0.46
COL4A4P53420 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A4P53420 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.94■□□□□ 0.46
COL4A4P53420 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A4P53420 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.94■□□□□ 0.46
COL4A4P53420 AC132938.2-201ENST00000579188 680 ntBASIC17.94■□□□□ 0.46
COL4A4P53420 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.94■□□□□ 0.46
COL4A4P53420 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
COL4A4P53420 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.94■□□□□ 0.46
COL4A4P53420 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.94■□□□□ 0.46
COL4A4P53420 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.94■□□□□ 0.46
COL4A4P53420 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.94■□□□□ 0.46
COL4A4P53420 AL591163.1-201ENST00000641757 987 ntBASIC17.94■□□□□ 0.46
COL4A4P53420 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A4P53420 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A4P53420 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A4P53420 SLC22A20-204ENST00000530038 1673 ntBASIC17.94■□□□□ 0.46
COL4A4P53420 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A4P53420 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.93■□□□□ 0.46
COL4A4P53420 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.93■□□□□ 0.46
COL4A4P53420 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.93■□□□□ 0.46
COL4A4P53420 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 AC105233.2-201ENST00000523697 349 ntBASIC17.93■□□□□ 0.46
COL4A4P53420 AF228730.5-201ENST00000530288 346 ntBASIC17.93■□□□□ 0.46
COL4A4P53420 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
COL4A4P53420 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.93■□□□□ 0.46
COL4A4P53420 AC104794.3-201ENST00000566840 1248 ntBASIC17.93■□□□□ 0.46
COL4A4P53420 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
COL4A4P53420 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
COL4A4P53420 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.93■□□□□ 0.46
COL4A4P53420 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
COL4A4P53420 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL4A4P53420 HCG4-201ENST00000418983 998 ntBASIC17.93■□□□□ 0.46
COL4A4P53420 BANF1P1-201ENST00000553684 263 ntBASIC17.93■□□□□ 0.46
COL4A4P53420 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
COL4A4P53420 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.93■□□□□ 0.46
COL4A4P53420 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.93■□□□□ 0.46
COL4A4P53420 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 AC138969.3-201ENST00000546612 1459 ntBASIC17.92■□□□□ 0.46
COL4A4P53420 AC138932.2-201ENST00000548268 1459 ntBASIC17.92■□□□□ 0.46
COL4A4P53420 AC126755.4-201ENST00000549796 1459 ntBASIC17.92■□□□□ 0.46
COL4A4P53420 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 AL353732.1-201ENST00000569618 1459 ntBASIC17.92■□□□□ 0.46
COL4A4P53420 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL4A4P53420 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.92■□□□□ 0.46
COL4A4P53420 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms