Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC19.93■□□□□ 0.78
NUP88Q99567 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
NUP88Q99567 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.93■□□□□ 0.78
NUP88Q99567 AP006288.1-201ENST00000446065 395 ntBASIC19.93■□□□□ 0.78
NUP88Q99567 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NUP88Q99567 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.93■□□□□ 0.78
NUP88Q99567 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.93■□□□□ 0.78
NUP88Q99567 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.93■□□□□ 0.78
NUP88Q99567 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
NUP88Q99567 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NUP88Q99567 AC092919.2-201ENST00000623631 1645 ntBASIC19.93■□□□□ 0.78
NUP88Q99567 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC19.93■□□□□ 0.78
NUP88Q99567 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.93■□□□□ 0.78
NUP88Q99567 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NUP88Q99567 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
NUP88Q99567 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NUP88Q99567 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.93■□□□□ 0.78
NUP88Q99567 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
NUP88Q99567 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.92■□□□□ 0.78
NUP88Q99567 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
NUP88Q99567 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.92■□□□□ 0.78
NUP88Q99567 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.92■□□□□ 0.78
NUP88Q99567 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
NUP88Q99567 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
NUP88Q99567 FAM58CP-201ENST00000435741 640 ntBASIC19.92■□□□□ 0.78
NUP88Q99567 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.92■□□□□ 0.78
NUP88Q99567 AC074386.1-202ENST00000463561 864 ntBASIC19.92■□□□□ 0.78
NUP88Q99567 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.92■□□□□ 0.78
NUP88Q99567 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
NUP88Q99567 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.92■□□□□ 0.78
NUP88Q99567 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.92■□□□□ 0.78
NUP88Q99567 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
NUP88Q99567 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
NUP88Q99567 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.92■□□□□ 0.78
NUP88Q99567 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NUP88Q99567 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.92■□□□□ 0.78
NUP88Q99567 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
NUP88Q99567 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
NUP88Q99567 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NUP88Q99567 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.91■□□□□ 0.78
NUP88Q99567 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.91■□□□□ 0.78
NUP88Q99567 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NUP88Q99567 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.91■□□□□ 0.78
NUP88Q99567 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.91■□□□□ 0.78
NUP88Q99567 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.91■□□□□ 0.78
NUP88Q99567 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
NUP88Q99567 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
NUP88Q99567 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.91■□□□□ 0.78
NUP88Q99567 CEND1P1-201ENST00000451006 455 ntBASIC19.91■□□□□ 0.78
NUP88Q99567 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.91■□□□□ 0.78
NUP88Q99567 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.91■□□□□ 0.78
NUP88Q99567 AC079781.4-201ENST00000641908 219 ntBASIC19.91■□□□□ 0.78
NUP88Q99567 ELL2P1-201ENST00000413990 1906 ntBASIC19.91■□□□□ 0.78
NUP88Q99567 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
NUP88Q99567 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.91■□□□□ 0.78
NUP88Q99567 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
NUP88Q99567 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.91■□□□□ 0.78
NUP88Q99567 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NUP88Q99567 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
NUP88Q99567 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.9■□□□□ 0.78
NUP88Q99567 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.9■□□□□ 0.78
NUP88Q99567 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NUP88Q99567 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.9■□□□□ 0.78
NUP88Q99567 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
NUP88Q99567 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NUP88Q99567 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.9■□□□□ 0.78
NUP88Q99567 AL513480.1-201ENST00000451731 511 ntBASIC19.9■□□□□ 0.78
NUP88Q99567 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.9■□□□□ 0.78
NUP88Q99567 AC091812.2-201ENST00000619081 385 ntBASIC19.9■□□□□ 0.78
NUP88Q99567 AC007064.4-201ENST00000637740 555 ntBASIC19.9■□□□□ 0.78
NUP88Q99567 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NUP88Q99567 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NUP88Q99567 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NUP88Q99567 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NUP88Q99567 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.9■□□□□ 0.78
NUP88Q99567 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms