Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.07■□□□□ 0.96
SYNE4Q8N205 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 AC005225.4-201ENST00000557330 545 ntBASIC21.07■□□□□ 0.96
SYNE4Q8N205 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 MPDU1-223ENST00000582151 728 ntBASIC21.07■□□□□ 0.96
SYNE4Q8N205 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 AL031055.1-201ENST00000606362 631 ntBASIC21.07■□□□□ 0.96
SYNE4Q8N205 AC012645.4-201ENST00000610691 1061 ntBASIC21.07■□□□□ 0.96
SYNE4Q8N205 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC21.07■□□□□ 0.96
SYNE4Q8N205 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SYNE4Q8N205 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 AC092053.1-201ENST00000605787 1936 ntBASIC21.06■□□□□ 0.96
SYNE4Q8N205 AC016396.2-201ENST00000562575 1417 ntBASIC21.06■□□□□ 0.96
SYNE4Q8N205 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 MTRF1LP2-201ENST00000506027 1122 ntBASIC21.06■□□□□ 0.96
SYNE4Q8N205 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 AC084121.4-201ENST00000641598 221 ntBASIC21.06■□□□□ 0.96
SYNE4Q8N205 AF228730.8-201ENST00000642140 221 ntBASIC21.06■□□□□ 0.96
SYNE4Q8N205 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 AC131009.4-201ENST00000624048 1740 ntBASIC21.06■□□□□ 0.96
SYNE4Q8N205 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SYNE4Q8N205 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
SYNE4Q8N205 AC016027.1-202ENST00000607927 1699 ntBASIC21.05■□□□□ 0.96
SYNE4Q8N205 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 GK-202ENST00000378941 458 ntTSL 3 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 KLF2P3-201ENST00000451977 1087 ntBASIC21.05■□□□□ 0.96
SYNE4Q8N205 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.05■□□□□ 0.96
SYNE4Q8N205 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 STX3-203ENST00000529177 1571 ntTSL 2 BASIC21.05■□□□□ 0.96
SYNE4Q8N205 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SYNE4Q8N205 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms