Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
YBX1P67809 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.64■□□□□ 0.25
YBX1P67809 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.64■□□□□ 0.25
YBX1P67809 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 AC243591.1-201ENST00000452967 1364 ntBASIC16.64■□□□□ 0.25
YBX1P67809 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.63■□□□□ 0.25
YBX1P67809 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 AL662844.4-201ENST00000606367 2838 ntBASIC16.63■□□□□ 0.25
YBX1P67809 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.63■□□□□ 0.25
YBX1P67809 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.63■□□□□ 0.25
YBX1P67809 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
YBX1P67809 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 AC079776.4-201ENST00000511039 504 ntBASIC16.63■□□□□ 0.25
YBX1P67809 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
YBX1P67809 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.63■□□□□ 0.25
YBX1P67809 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
YBX1P67809 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.63■□□□□ 0.25
YBX1P67809 AL353135.1-201ENST00000606729 504 ntBASIC16.63■□□□□ 0.25
YBX1P67809 AL589182.2-201ENST00000619332 1049 ntBASIC16.63■□□□□ 0.25
YBX1P67809 AC004706.3-202ENST00000621574 984 ntBASIC16.63■□□□□ 0.25
YBX1P67809 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
YBX1P67809 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
YBX1P67809 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
YBX1P67809 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
YBX1P67809 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.63■□□□□ 0.25
YBX1P67809 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
YBX1P67809 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
YBX1P67809 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 NCF1C-201ENST00000438382 1427 ntBASIC16.62■□□□□ 0.25
YBX1P67809 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
YBX1P67809 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
YBX1P67809 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.62■□□□□ 0.25
YBX1P67809 AC092068.3-201ENST00000587894 2016 ntBASIC16.62■□□□□ 0.25
YBX1P67809 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
YBX1P67809 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.62■□□□□ 0.25
YBX1P67809 AC073621.1-201ENST00000392730 636 ntBASIC16.62■□□□□ 0.25
YBX1P67809 ELK2BP-201ENST00000415014 1224 ntBASIC16.62■□□□□ 0.25
YBX1P67809 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.62■□□□□ 0.25
YBX1P67809 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.62■□□□□ 0.25
YBX1P67809 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.62■□□□□ 0.25
YBX1P67809 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.62■□□□□ 0.25
YBX1P67809 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.62■□□□□ 0.25
YBX1P67809 AC139887.3-201ENST00000568585 713 ntBASIC16.62■□□□□ 0.25
YBX1P67809 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.62■□□□□ 0.25
YBX1P67809 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.62■□□□□ 0.25
YBX1P67809 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.62■□□□□ 0.25
YBX1P67809 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.62■□□□□ 0.25
YBX1P67809 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.62■□□□□ 0.25
YBX1P67809 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.62■□□□□ 0.25
YBX1P67809 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 LINC02012-201ENST00000608206 1725 ntBASIC16.62■□□□□ 0.25
YBX1P67809 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
YBX1P67809 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
YBX1P67809 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
YBX1P67809 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
YBX1P67809 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
YBX1P67809 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.61■□□□□ 0.25
YBX1P67809 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
YBX1P67809 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.61■□□□□ 0.25
YBX1P67809 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.61■□□□□ 0.25
YBX1P67809 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
YBX1P67809 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
YBX1P67809 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
YBX1P67809 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.61■□□□□ 0.25
YBX1P67809 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.61■□□□□ 0.25
YBX1P67809 ACTG1P4-201ENST00000425123 1122 ntBASIC16.61■□□□□ 0.25
YBX1P67809 LAGE3P1-201ENST00000425356 484 ntBASIC16.61■□□□□ 0.25
YBX1P67809 KRT18P27-201ENST00000427733 1299 ntBASIC16.61■□□□□ 0.25
YBX1P67809 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.61■□□□□ 0.25
YBX1P67809 AP001005.1-201ENST00000571755 1248 ntBASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms