Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13CQ709C8 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13CQ709C8 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13CQ709C8 AC004945.1-201ENST00000416738 983 ntBASIC14.05□□□□□ -0.16
VPS13CQ709C8 AC241585.1-201ENST00000433527 519 ntBASIC14.05□□□□□ -0.16
VPS13CQ709C8 AL353779.1-201ENST00000434793 351 ntBASIC14.05□□□□□ -0.16
VPS13CQ709C8 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS13CQ709C8 AC018529.1-201ENST00000613063 361 ntBASIC14.05□□□□□ -0.16
VPS13CQ709C8 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS13CQ709C8 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS13CQ709C8 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS13CQ709C8 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13CQ709C8 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13CQ709C8 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
VPS13CQ709C8 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.04□□□□□ -0.16
VPS13CQ709C8 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.04□□□□□ -0.16
VPS13CQ709C8 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.04□□□□□ -0.16
VPS13CQ709C8 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.04□□□□□ -0.16
VPS13CQ709C8 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 BICD1-207ENST00000551848 1962 ntBASIC14.04□□□□□ -0.16
VPS13CQ709C8 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 ANKRD19P-201ENST00000338192 862 ntBASIC14.04□□□□□ -0.16
VPS13CQ709C8 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 RN7SL752P-201ENST00000463779 287 ntBASIC14.04□□□□□ -0.16
VPS13CQ709C8 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 AC138028.4-201ENST00000564984 1845 ntBASIC14.04□□□□□ -0.16
VPS13CQ709C8 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13CQ709C8 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 MIR4515-201ENST00000584082 81 ntBASIC14.04□□□□□ -0.16
VPS13CQ709C8 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS13CQ709C8 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.03□□□□□ -0.16
VPS13CQ709C8 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS13CQ709C8 GNAQP1-201ENST00000444815 1067 ntBASIC14.03□□□□□ -0.16
VPS13CQ709C8 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
VPS13CQ709C8 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.03□□□□□ -0.16
VPS13CQ709C8 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 MIR4538-201ENST00000581377 78 ntBASIC14.03□□□□□ -0.16
VPS13CQ709C8 AC008735.3-201ENST00000596646 500 ntBASIC14.03□□□□□ -0.16
VPS13CQ709C8 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
VPS13CQ709C8 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS13CQ709C8 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
VPS13CQ709C8 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
VPS13CQ709C8 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.03□□□□□ -0.16
VPS13CQ709C8 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS13CQ709C8 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS13CQ709C8 AC027307.2-201ENST00000591252 911 ntBASIC14.03□□□□□ -0.16
VPS13CQ709C8 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13CQ709C8 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms