Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BRCA1P38398 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCA1P38398 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.43■□□□□ 0.86
BRCA1P38398 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
BRCA1P38398 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC20.43■□□□□ 0.86
BRCA1P38398 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCA1P38398 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCA1P38398 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.42■□□□□ 0.86
BRCA1P38398 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCA1P38398 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BRCA1P38398 NEU3-203ENST00000529024 581 ntTSL 3 BASIC20.42■□□□□ 0.86
BRCA1P38398 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC20.42■□□□□ 0.86
BRCA1P38398 RRP7BP-205ENST00000566851 833 ntBASIC20.42■□□□□ 0.86
BRCA1P38398 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.42■□□□□ 0.86
BRCA1P38398 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.42■□□□□ 0.86
BRCA1P38398 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC20.42■□□□□ 0.86
BRCA1P38398 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
BRCA1P38398 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCA1P38398 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
BRCA1P38398 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.41■□□□□ 0.86
BRCA1P38398 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
BRCA1P38398 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.41■□□□□ 0.86
BRCA1P38398 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
BRCA1P38398 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC20.41■□□□□ 0.86
BRCA1P38398 MYCLP2-201ENST00000449268 967 ntBASIC20.41■□□□□ 0.86
BRCA1P38398 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC20.41■□□□□ 0.86
BRCA1P38398 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC20.41■□□□□ 0.86
BRCA1P38398 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
BRCA1P38398 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
BRCA1P38398 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
BRCA1P38398 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
BRCA1P38398 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCA1P38398 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.41■□□□□ 0.86
BRCA1P38398 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCA1P38398 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
BRCA1P38398 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCA1P38398 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCA1P38398 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
BRCA1P38398 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC20.41■□□□□ 0.86
BRCA1P38398 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.41■□□□□ 0.86
BRCA1P38398 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC20.41■□□□□ 0.86
BRCA1P38398 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.41■□□□□ 0.86
BRCA1P38398 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC20.41■□□□□ 0.86
BRCA1P38398 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.41■□□□□ 0.86
BRCA1P38398 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC20.41■□□□□ 0.86
BRCA1P38398 PFAS-212ENST00000625942 396 ntTSL 5 BASIC20.41■□□□□ 0.86
BRCA1P38398 AC018665.1-201ENST00000622927 1362 ntBASIC20.4■□□□□ 0.86
BRCA1P38398 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.4■□□□□ 0.86
BRCA1P38398 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.4■□□□□ 0.86
BRCA1P38398 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
BRCA1P38398 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
BRCA1P38398 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRCA1P38398 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
BRCA1P38398 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.4■□□□□ 0.86
BRCA1P38398 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRCA1P38398 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.4■□□□□ 0.86
BRCA1P38398 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRCA1P38398 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC20.4■□□□□ 0.86
BRCA1P38398 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.4■□□□□ 0.86
BRCA1P38398 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC20.4■□□□□ 0.86
BRCA1P38398 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
BRCA1P38398 CD74-212ENST00000524315 584 ntTSL 5 BASIC20.4■□□□□ 0.86
BRCA1P38398 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC20.4■□□□□ 0.86
BRCA1P38398 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
BRCA1P38398 AP001350.2-201ENST00000625104 1094 ntBASIC20.4■□□□□ 0.86
BRCA1P38398 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
BRCA1P38398 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.4■□□□□ 0.86
BRCA1P38398 AC020907.1-201ENST00000616460 1350 ntBASIC20.4■□□□□ 0.86
BRCA1P38398 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRCA1P38398 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRCA1P38398 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
BRCA1P38398 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.39■□□□□ 0.86
BRCA1P38398 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC20.39■□□□□ 0.86
BRCA1P38398 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
BRCA1P38398 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.39■□□□□ 0.86
BRCA1P38398 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
BRCA1P38398 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
BRCA1P38398 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
BRCA1P38398 MIR1247-201ENST00000408206 136 ntBASIC20.39■□□□□ 0.86
BRCA1P38398 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
BRCA1P38398 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC20.39■□□□□ 0.86
BRCA1P38398 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
BRCA1P38398 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.39■□□□□ 0.86
BRCA1P38398 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
BRCA1P38398 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
BRCA1P38398 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
BRCA1P38398 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRCA1P38398 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC20.39■□□□□ 0.85
BRCA1P38398 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRCA1P38398 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRCA1P38398 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRCA1P38398 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.39■□□□□ 0.85
BRCA1P38398 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRCA1P38398 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.39■□□□□ 0.85
BRCA1P38398 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
BRCA1P38398 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.39■□□□□ 0.85
BRCA1P38398 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
BRCA1P38398 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRCA1P38398 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRCA1P38398 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms