Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 HLA-J-203ENST00000494367 1087 ntBASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 AC034232.1-201ENST00000506026 1064 ntBASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 RNA5SP419-201ENST00000515908 135 ntBASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 AC024243.1-201ENST00000609234 778 ntBASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 AC079781.4-201ENST00000641908 219 ntBASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
PDLIM3Q53GG5 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 GAD2-202ENST00000376248 680 ntTSL 5 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 MIR600HG-201ENST00000449175 5984 ntBASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM3Q53GG5 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 MOK-208ENST00000519058 917 ntTSL 2 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 AC138894.3-201ENST00000603787 634 ntBASIC14.24□□□□□ -0.13
PDLIM3Q53GG5 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms