Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 FAM220BP-201ENST00000377689 816 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 AC007551.1-201ENST00000457394 519 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 AC023310.3-201ENST00000557027 670 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 AC100756.1-201ENST00000562736 682 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 AC138749.3-201ENST00000567691 622 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 AC073389.1-201ENST00000595595 795 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 AL133215.2-201ENST00000609242 977 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 AC116165.1-201ENST00000611806 668 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 BCRP2-202ENST00000447763 634 ntBASIC13.07□□□□□ -0.32
COL6A5A8TX70 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 BCRP6-201ENST00000510112 632 ntBASIC13.07□□□□□ -0.32
COL6A5A8TX70 BCRP7-201ENST00000511549 544 ntBASIC13.07□□□□□ -0.32
COL6A5A8TX70 MIR3619-201ENST00000579667 83 ntBASIC13.07□□□□□ -0.32
COL6A5A8TX70 AC233724.13-201ENST00000598383 410 ntBASIC13.07□□□□□ -0.32
COL6A5A8TX70 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 AL022328.3-201ENST00000607943 679 ntBASIC13.07□□□□□ -0.32
COL6A5A8TX70 AC009542.2-202ENST00000619004 1067 ntBASIC13.07□□□□□ -0.32
COL6A5A8TX70 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL6A5A8TX70 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC13.07□□□□□ -0.32
COL6A5A8TX70 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 FAM86HP-204ENST00000513466 959 ntBASIC13.06□□□□□ -0.32
COL6A5A8TX70 AC091271.1-201ENST00000611877 1162 ntBASIC13.06□□□□□ -0.32
COL6A5A8TX70 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 CDC14C-201ENST00000428251 1719 ntBASIC13.06□□□□□ -0.32
COL6A5A8TX70 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 AC123567.1-201ENST00000548294 1261 ntBASIC13.06□□□□□ -0.32
COL6A5A8TX70 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms