Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 FAM215A-202ENST00000632077 792 ntBASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 AC004817.3-201ENST00000602957 2129 ntBASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
PTCHD3Q3KNS1 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 RPS2P1-201ENST00000434010 821 ntBASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 AF228730.7-201ENST00000641842 219 ntBASIC16.77■□□□□ 0.28
PTCHD3Q3KNS1 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
PTCHD3Q3KNS1 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.77■□□□□ 0.27
PTCHD3Q3KNS1 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD3Q3KNS1 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
PTCHD3Q3KNS1 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD3Q3KNS1 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.77■□□□□ 0.27
PTCHD3Q3KNS1 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD3Q3KNS1 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTCHD3Q3KNS1 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 AC097637.2-201ENST00000624096 1997 ntBASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PTCHD3Q3KNS1 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms