Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.8■□□□□ 0.76
CTDNEP1O95476 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.8■□□□□ 0.76
CTDNEP1O95476 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.8■□□□□ 0.76
CTDNEP1O95476 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDNEP1O95476 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CTDNEP1O95476 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.8■□□□□ 0.76
CTDNEP1O95476 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.8■□□□□ 0.76
CTDNEP1O95476 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTDNEP1O95476 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CTDNEP1O95476 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 HLA-A-202ENST00000376806 1854 ntBASIC19.79■□□□□ 0.76
CTDNEP1O95476 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTDNEP1O95476 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC19.79■□□□□ 0.76
CTDNEP1O95476 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 AL391256.1-201ENST00000443260 1855 ntBASIC19.78■□□□□ 0.76
CTDNEP1O95476 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 AC079781.3-201ENST00000449110 356 ntBASIC19.78■□□□□ 0.76
CTDNEP1O95476 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 AC148477.8-201ENST00000624298 468 ntBASIC19.78■□□□□ 0.76
CTDNEP1O95476 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
CTDNEP1O95476 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTDNEP1O95476 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 KRT8P49-201ENST00000604166 1432 ntBASIC19.77■□□□□ 0.76
CTDNEP1O95476 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.77■□□□□ 0.76
CTDNEP1O95476 AC018712.1-201ENST00000455767 687 ntBASIC19.77■□□□□ 0.76
CTDNEP1O95476 SLC25A6P2-201ENST00000497974 877 ntBASIC19.77■□□□□ 0.76
CTDNEP1O95476 RNPS1P1-201ENST00000507437 918 ntBASIC19.77■□□□□ 0.76
CTDNEP1O95476 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms