Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.84■□□□□ 0.29
SHMT2P34897 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.84■□□□□ 0.29
SHMT2P34897 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.84■□□□□ 0.29
SHMT2P34897 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.84■□□□□ 0.29
SHMT2P34897 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.84■□□□□ 0.29
SHMT2P34897 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 AC006557.2-201ENST00000592985 1240 ntBASIC16.84■□□□□ 0.29
SHMT2P34897 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.84■□□□□ 0.29
SHMT2P34897 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.84■□□□□ 0.29
SHMT2P34897 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.84■□□□□ 0.29
SHMT2P34897 HLA-A-201ENST00000376802 1334 ntBASIC16.84■□□□□ 0.29
SHMT2P34897 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SHMT2P34897 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.84■□□□□ 0.29
SHMT2P34897 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SHMT2P34897 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SHMT2P34897 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHMT2P34897 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SHMT2P34897 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.83■□□□□ 0.29
SHMT2P34897 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.83■□□□□ 0.28
SHMT2P34897 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.83■□□□□ 0.28
SHMT2P34897 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.83■□□□□ 0.28
SHMT2P34897 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.83■□□□□ 0.28
SHMT2P34897 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.83■□□□□ 0.28
SHMT2P34897 HNRNPDP1-201ENST00000439535 754 ntBASIC16.83■□□□□ 0.28
SHMT2P34897 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.83■□□□□ 0.28
SHMT2P34897 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
SHMT2P34897 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.83■□□□□ 0.28
SHMT2P34897 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.83■□□□□ 0.28
SHMT2P34897 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SHMT2P34897 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.83■□□□□ 0.28
SHMT2P34897 AL121761.2-201ENST00000598007 1648 ntBASIC16.83■□□□□ 0.28
SHMT2P34897 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.83■□□□□ 0.28
SHMT2P34897 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.83■□□□□ 0.28
SHMT2P34897 FAM215A-202ENST00000632077 792 ntBASIC16.83■□□□□ 0.28
SHMT2P34897 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.83■□□□□ 0.28
SHMT2P34897 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHMT2P34897 AC097637.2-201ENST00000624096 1997 ntBASIC16.82■□□□□ 0.28
SHMT2P34897 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SHMT2P34897 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 AL138688.1-201ENST00000624851 1594 ntBASIC16.82■□□□□ 0.28
SHMT2P34897 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SHMT2P34897 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.82■□□□□ 0.28
SHMT2P34897 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SHMT2P34897 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.82■□□□□ 0.28
SHMT2P34897 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.82■□□□□ 0.28
SHMT2P34897 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.82■□□□□ 0.28
SHMT2P34897 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.82■□□□□ 0.28
SHMT2P34897 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.82■□□□□ 0.28
SHMT2P34897 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms