Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC4P09017 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HOXC4P09017 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.63■□□□□ 0.25
HOXC4P09017 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.63■□□□□ 0.25
HOXC4P09017 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 AC067852.2-201ENST00000590513 2313 ntBASIC16.63■□□□□ 0.25
HOXC4P09017 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HOXC4P09017 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 AC131009.4-201ENST00000624048 1740 ntBASIC16.63■□□□□ 0.25
HOXC4P09017 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HOXC4P09017 PMS2P4-201ENST00000412466 1052 ntBASIC16.63■□□□□ 0.25
HOXC4P09017 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.63■□□□□ 0.25
HOXC4P09017 AL671277.1-201ENST00000429656 993 ntBASIC16.63■□□□□ 0.25
HOXC4P09017 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.63■□□□□ 0.25
HOXC4P09017 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.63■□□□□ 0.25
HOXC4P09017 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.63■□□□□ 0.25
HOXC4P09017 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.63■□□□□ 0.25
HOXC4P09017 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.63■□□□□ 0.25
HOXC4P09017 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.63■□□□□ 0.25
HOXC4P09017 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
HOXC4P09017 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.63■□□□□ 0.25
HOXC4P09017 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 AL009183.1-201ENST00000603760 355 ntBASIC16.63■□□□□ 0.25
HOXC4P09017 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
HOXC4P09017 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 AKAP8P1-201ENST00000434743 1349 ntBASIC16.63■□□□□ 0.25
HOXC4P09017 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HOXC4P09017 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.63■□□□□ 0.25
HOXC4P09017 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.62■□□□□ 0.25
HOXC4P09017 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
HOXC4P09017 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.62■□□□□ 0.25
HOXC4P09017 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.62■□□□□ 0.25
HOXC4P09017 AC007613.1-201ENST00000572811 2597 ntBASIC16.62■□□□□ 0.25
HOXC4P09017 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
HOXC4P09017 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HOXC4P09017 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 AL355306.1-201ENST00000415580 579 ntBASIC16.62■□□□□ 0.25
HOXC4P09017 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.62■□□□□ 0.25
HOXC4P09017 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.62■□□□□ 0.25
HOXC4P09017 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.62■□□□□ 0.25
HOXC4P09017 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.62■□□□□ 0.25
HOXC4P09017 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.62■□□□□ 0.25
HOXC4P09017 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.62■□□□□ 0.25
HOXC4P09017 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.62■□□□□ 0.25
HOXC4P09017 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.62■□□□□ 0.25
HOXC4P09017 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.62■□□□□ 0.25
HOXC4P09017 AC004835.2-201ENST00000603762 682 ntBASIC16.62■□□□□ 0.25
HOXC4P09017 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.62■□□□□ 0.25
HOXC4P09017 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.62■□□□□ 0.25
HOXC4P09017 AC026120.1-201ENST00000611536 926 ntBASIC16.62■□□□□ 0.25
HOXC4P09017 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.62■□□□□ 0.25
HOXC4P09017 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.62■□□□□ 0.25
HOXC4P09017 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
HOXC4P09017 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HOXC4P09017 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
HOXC4P09017 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HOXC4P09017 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
HOXC4P09017 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HOXC4P09017 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.61■□□□□ 0.25
HOXC4P09017 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
HOXC4P09017 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.61■□□□□ 0.25
HOXC4P09017 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.61■□□□□ 0.25
HOXC4P09017 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 RNU1-129P-201ENST00000384064 167 ntBASIC16.61■□□□□ 0.25
HOXC4P09017 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.61■□□□□ 0.25
HOXC4P09017 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms