Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC064862.7-201ENST00000604520 867 ntBASIC16.64■□□□□ 0.25
LDLRP01130 AC116407.2-201ENST00000613639 860 ntBASIC16.64■□□□□ 0.25
LDLRP01130 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 CICP6-201ENST00000457191 2729 ntBASIC16.64■□□□□ 0.25
LDLRP01130 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
LDLRP01130 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 IL9RP2-201ENST00000423948 1312 ntBASIC16.64■□□□□ 0.25
LDLRP01130 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LDLRP01130 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.64■□□□□ 0.25
LDLRP01130 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LDLRP01130 AC060834.1-201ENST00000443027 2032 ntBASIC16.63■□□□□ 0.25
LDLRP01130 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LDLRP01130 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.63■□□□□ 0.25
LDLRP01130 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.63■□□□□ 0.25
LDLRP01130 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
LDLRP01130 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.63■□□□□ 0.25
LDLRP01130 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 AKR1C7P-201ENST00000305623 895 ntBASIC16.63■□□□□ 0.25
LDLRP01130 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
LDLRP01130 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 MIR1233-2-201ENST00000408138 82 ntBASIC16.63■□□□□ 0.25
LDLRP01130 MIR1233-1-201ENST00000408722 82 ntBASIC16.63■□□□□ 0.25
LDLRP01130 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.63■□□□□ 0.25
LDLRP01130 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.63■□□□□ 0.25
LDLRP01130 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.63■□□□□ 0.25
LDLRP01130 AP001005.1-201ENST00000571755 1248 ntBASIC16.63■□□□□ 0.25
LDLRP01130 MIR3917-201ENST00000580971 93 ntBASIC16.63■□□□□ 0.25
LDLRP01130 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.63■□□□□ 0.25
LDLRP01130 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.63■□□□□ 0.25
LDLRP01130 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.63■□□□□ 0.25
LDLRP01130 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LDLRP01130 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LDLRP01130 REXO1L11P-201ENST00000620964 1927 ntBASIC16.62■□□□□ 0.25
LDLRP01130 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
LDLRP01130 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LDLRP01130 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.62■□□□□ 0.25
LDLRP01130 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LDLRP01130 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.62■□□□□ 0.25
LDLRP01130 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.62■□□□□ 0.25
LDLRP01130 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 SAPCD2P3-201ENST00000455031 850 ntBASIC16.62■□□□□ 0.25
LDLRP01130 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.62■□□□□ 0.25
LDLRP01130 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.62■□□□□ 0.25
LDLRP01130 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.62■□□□□ 0.25
LDLRP01130 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
LDLRP01130 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.62■□□□□ 0.25
LDLRP01130 AC092865.5-201ENST00000545435 363 ntBASIC16.62■□□□□ 0.25
LDLRP01130 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.62■□□□□ 0.25
LDLRP01130 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.62■□□□□ 0.25
LDLRP01130 AC090616.6-201ENST00000582640 721 ntBASIC16.62■□□□□ 0.25
LDLRP01130 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 AC099336.1-202ENST00000602961 463 ntBASIC16.62■□□□□ 0.25
LDLRP01130 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 FLJ38576-201ENST00000623820 2459 ntBASIC16.62■□□□□ 0.25
LDLRP01130 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.62■□□□□ 0.25
LDLRP01130 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.62■□□□□ 0.25
LDLRP01130 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LDLRP01130 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.62■□□□□ 0.25
LDLRP01130 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.62■□□□□ 0.25
LDLRP01130 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
LDLRP01130 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LDLRP01130 LINC00167-201ENST00000530583 1419 ntBASIC16.62■□□□□ 0.25
LDLRP01130 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 AL162727.3-201ENST00000635661 2787 ntBASIC16.61■□□□□ 0.25
LDLRP01130 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.61■□□□□ 0.25
LDLRP01130 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDLRP01130 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms