Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH5O43196 AC010460.3-201ENST00000511359 1579 ntBASIC23.63■■□□□ 1.37
MSH5O43196 AC005771.1-201ENST00000585581 349 ntBASIC23.63■■□□□ 1.37
MSH5O43196 AC024563.2-201ENST00000603282 481 ntBASIC23.63■■□□□ 1.37
MSH5O43196 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH5O43196 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH5O43196 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH5O43196 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
MSH5O43196 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC23.62■■□□□ 1.37
MSH5O43196 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC23.62■■□□□ 1.37
MSH5O43196 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC23.62■■□□□ 1.37
MSH5O43196 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC23.62■■□□□ 1.37
MSH5O43196 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 LNX1-AS2-202ENST00000509974 628 ntTSL 2 BASIC23.62■■□□□ 1.37
MSH5O43196 SDR16C6P-202ENST00000524136 955 ntBASIC23.62■■□□□ 1.37
MSH5O43196 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC23.62■■□□□ 1.37
MSH5O43196 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC23.62■■□□□ 1.37
MSH5O43196 PPOX-214ENST00000535223 664 ntTSL 3 BASIC23.62■■□□□ 1.37
MSH5O43196 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC23.62■■□□□ 1.37
MSH5O43196 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC23.62■■□□□ 1.37
MSH5O43196 PRKN-208ENST00000610470 531 ntTSL 2 BASIC23.62■■□□□ 1.37
MSH5O43196 PRKN-209ENST00000612485 225 ntTSL 5 BASIC23.62■■□□□ 1.37
MSH5O43196 MIR7706-201ENST00000613747 67 ntBASIC23.62■■□□□ 1.37
MSH5O43196 AC026422.1-201ENST00000623961 452 ntBASIC23.62■■□□□ 1.37
MSH5O43196 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
MSH5O43196 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 FGF13-205ENST00000441825 1625 ntTSL 5 BASIC23.62■■□□□ 1.37
MSH5O43196 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH5O43196 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC23.62■■□□□ 1.37
MSH5O43196 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC23.62■■□□□ 1.37
MSH5O43196 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH5O43196 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH5O43196 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH5O43196 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
MSH5O43196 AP001002.1-201ENST00000625148 1513 ntBASIC23.61■■□□□ 1.37
MSH5O43196 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC23.61■■□□□ 1.37
MSH5O43196 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH5O43196 GTF3AP6-201ENST00000432585 986 ntBASIC23.61■■□□□ 1.37
MSH5O43196 ELP6-205ENST00000439305 880 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH5O43196 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC23.61■■□□□ 1.37
MSH5O43196 AC132008.2-207ENST00000454517 770 ntBASIC23.61■■□□□ 1.37
MSH5O43196 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH5O43196 MTND4P2-201ENST00000507767 1203 ntBASIC23.61■■□□□ 1.37
MSH5O43196 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 AC096582.2-201ENST00000510860 516 ntBASIC23.61■■□□□ 1.37
MSH5O43196 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC23.61■■□□□ 1.37
MSH5O43196 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC23.61■■□□□ 1.37
MSH5O43196 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC23.61■■□□□ 1.37
MSH5O43196 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 AL353692.3-201ENST00000407031 1396 ntBASIC23.61■■□□□ 1.37
MSH5O43196 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 AP000526.1-201ENST00000603308 1388 ntBASIC23.61■■□□□ 1.37
MSH5O43196 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH5O43196 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
MSH5O43196 HOXB1-202ENST00000577092 1414 ntBASIC23.6■■□□□ 1.37
MSH5O43196 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH5O43196 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 ENSA-205ENST00000361532 792 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH5O43196 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH5O43196 VN1R21P-201ENST00000426703 765 ntBASIC23.6■■□□□ 1.37
MSH5O43196 KIZ-AS1-202ENST00000443753 1161 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
MSH5O43196 DNAJB3-202ENST00000449667 1266 ntBASIC23.6■■□□□ 1.37
MSH5O43196 NRON-201ENST00000517270 370 ntBASIC23.6■■□□□ 1.37
MSH5O43196 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH5O43196 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH5O43196 AGGF1P7-201ENST00000562369 913 ntBASIC23.6■■□□□ 1.37
MSH5O43196 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC23.6■■□□□ 1.37
MSH5O43196 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC23.6■■□□□ 1.37
MSH5O43196 TEN1-204ENST00000588202 862 ntTSL 3 BASIC23.6■■□□□ 1.37
MSH5O43196 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC23.6■■□□□ 1.37
MSH5O43196 AC006946.3-201ENST00000609791 756 ntBASIC23.6■■□□□ 1.37
MSH5O43196 AC006328.2-201ENST00000623198 397 ntBASIC23.6■■□□□ 1.37
MSH5O43196 AP003497.2-201ENST00000624220 967 ntBASIC23.6■■□□□ 1.37
MSH5O43196 AC012005.2-201ENST00000624333 397 ntBASIC23.6■■□□□ 1.37
MSH5O43196 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms