Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CUEDC1Q9NWM3 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CUEDC1Q9NWM3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CUEDC1Q9NWM3 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CUEDC1Q9NWM3 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CUEDC1Q9NWM3 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CUEDC1Q9NWM3 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.65■□□□□ 0.26
CUEDC1Q9NWM3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CUEDC1Q9NWM3 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.26
CUEDC1Q9NWM3 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.64■□□□□ 0.26
CUEDC1Q9NWM3 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
CUEDC1Q9NWM3 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 KRT18P67-201ENST00000432816 1264 ntBASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 HNRNPDP1-201ENST00000439535 754 ntBASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 AC018712.1-201ENST00000455767 687 ntBASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 RNA5SP419-201ENST00000515908 135 ntBASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 AC106730.1-201ENST00000566722 1090 ntBASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.64■□□□□ 0.25
CUEDC1Q9NWM3 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 NCF1C-201ENST00000438382 1427 ntBASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 ACTG1P4-201ENST00000425123 1122 ntBASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CUEDC1Q9NWM3 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 AF186996.4-201ENST00000467186 377 ntBASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 OR7E14P-202ENST00000530490 1290 ntBASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 TERC-201ENST00000602385 541 ntBASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 AC107918.4-202ENST00000641623 219 ntBASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms