Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A1P12109 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.84■□□□□ 0.61
COL6A1P12109 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
COL6A1P12109 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A1P12109 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
COL6A1P12109 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
COL6A1P12109 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A1P12109 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.84■□□□□ 0.61
COL6A1P12109 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A1P12109 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A1P12109 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.84■□□□□ 0.61
COL6A1P12109 AP000997.3-201ENST00000623333 2250 ntBASIC18.84■□□□□ 0.61
COL6A1P12109 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A1P12109 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A1P12109 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A1P12109 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A1P12109 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.83■□□□□ 0.61
COL6A1P12109 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
COL6A1P12109 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.83■□□□□ 0.61
COL6A1P12109 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
COL6A1P12109 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
COL6A1P12109 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A1P12109 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A1P12109 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.83■□□□□ 0.61
COL6A1P12109 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A1P12109 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A1P12109 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.83■□□□□ 0.6
COL6A1P12109 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A1P12109 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.83■□□□□ 0.6
COL6A1P12109 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.83■□□□□ 0.6
COL6A1P12109 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.83■□□□□ 0.6
COL6A1P12109 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.83■□□□□ 0.6
COL6A1P12109 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A1P12109 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.83■□□□□ 0.6
COL6A1P12109 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.83■□□□□ 0.6
COL6A1P12109 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A1P12109 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
COL6A1P12109 AC010336.2-201ENST00000564226 506 ntBASIC18.83■□□□□ 0.6
COL6A1P12109 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.83■□□□□ 0.6
COL6A1P12109 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.83■□□□□ 0.6
COL6A1P12109 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A1P12109 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.83■□□□□ 0.6
COL6A1P12109 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.83■□□□□ 0.6
COL6A1P12109 SPDYE12P-201ENST00000618416 771 ntBASIC18.83■□□□□ 0.6
COL6A1P12109 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A1P12109 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
COL6A1P12109 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A1P12109 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A1P12109 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A1P12109 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.83■□□□□ 0.6
COL6A1P12109 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A1P12109 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A1P12109 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A1P12109 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.82■□□□□ 0.6
COL6A1P12109 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
COL6A1P12109 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.82■□□□□ 0.6
COL6A1P12109 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
COL6A1P12109 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL6A1P12109 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.82■□□□□ 0.6
COL6A1P12109 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.82■□□□□ 0.6
COL6A1P12109 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.82■□□□□ 0.6
COL6A1P12109 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
COL6A1P12109 HILS1-202ENST00000545329 423 ntBASIC18.82■□□□□ 0.6
COL6A1P12109 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.82■□□□□ 0.6
COL6A1P12109 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A1P12109 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A1P12109 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
COL6A1P12109 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A1P12109 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL6A1P12109 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.82■□□□□ 0.6
COL6A1P12109 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.82■□□□□ 0.6
COL6A1P12109 AC093503.3-201ENST00000624917 2352 ntBASIC18.82■□□□□ 0.6
COL6A1P12109 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A1P12109 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A1P12109 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A1P12109 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL6A1P12109 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.81■□□□□ 0.6
COL6A1P12109 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A1P12109 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
COL6A1P12109 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A1P12109 AC009477.1-201ENST00000452936 217 ntBASIC18.81■□□□□ 0.6
COL6A1P12109 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.81■□□□□ 0.6
COL6A1P12109 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A1P12109 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A1P12109 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.81■□□□□ 0.6
COL6A1P12109 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.81■□□□□ 0.6
COL6A1P12109 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.81■□□□□ 0.6
COL6A1P12109 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms