Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clk4O35493 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clk4O35493 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clk4O35493 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clk4O35493 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Clk4O35493 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC20.92■□□□□ 0.94
Clk4O35493 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clk4O35493 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Clk4O35493 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Clk4O35493 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clk4O35493 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Clk4O35493 Gm7332-201ENSMUST00000118351 454 ntBASIC20.91■□□□□ 0.94
Clk4O35493 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Clk4O35493 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Clk4O35493 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Clk4O35493 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clk4O35493 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.9■□□□□ 0.94
Clk4O35493 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.9■□□□□ 0.94
Clk4O35493 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clk4O35493 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Clk4O35493 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Clk4O35493 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Clk4O35493 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Clk4O35493 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Clk4O35493 Gm27502-201ENSMUST00000183495 199 ntBASIC20.89■□□□□ 0.93
Clk4O35493 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.89■□□□□ 0.93
Clk4O35493 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Clk4O35493 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
Clk4O35493 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.89■□□□□ 0.93
Clk4O35493 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.89■□□□□ 0.93
Clk4O35493 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
Clk4O35493 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Clk4O35493 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.88■□□□□ 0.93
Clk4O35493 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Clk4O35493 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Clk4O35493 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Clk4O35493 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clk4O35493 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clk4O35493 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clk4O35493 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk4O35493 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.86■□□□□ 0.93
Clk4O35493 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Clk4O35493 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Clk4O35493 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk4O35493 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk4O35493 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clk4O35493 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Clk4O35493 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clk4O35493 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Clk4O35493 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Clk4O35493 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.85■□□□□ 0.93
Clk4O35493 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clk4O35493 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Clk4O35493 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
Clk4O35493 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Clk4O35493 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Clk4O35493 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Clk4O35493 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clk4O35493 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Clk4O35493 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Clk4O35493 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Clk4O35493 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clk4O35493 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clk4O35493 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clk4O35493 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.81■□□□□ 0.92
Clk4O35493 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clk4O35493 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clk4O35493 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Clk4O35493 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clk4O35493 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clk4O35493 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.81■□□□□ 0.92
Clk4O35493 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clk4O35493 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clk4O35493 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clk4O35493 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Clk4O35493 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clk4O35493 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clk4O35493 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clk4O35493 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clk4O35493 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Clk4O35493 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.79■□□□□ 0.92
Clk4O35493 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clk4O35493 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clk4O35493 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Clk4O35493 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Clk4O35493 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Clk4O35493 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clk4O35493 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clk4O35493 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Clk4O35493 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.78■□□□□ 0.92
Clk4O35493 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clk4O35493 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Clk4O35493 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Clk4O35493 Gm10420-201ENSMUST00000121713 882 ntBASIC20.77■□□□□ 0.92
Clk4O35493 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Clk4O35493 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Clk4O35493 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Clk4O35493 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.77■□□□□ 0.91
Clk4O35493 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Clk4O35493 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms