Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA2Q9Y261 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 ENSA-206ENST00000361631 725 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 DANCR-204ENST00000444958 709 ntTSL 3 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 AC122714.2-201ENST00000502787 707 ntBASIC13.96□□□□□ -0.17
FOXA2Q9Y261 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 AC009533.2-201ENST00000543664 586 ntBASIC13.96□□□□□ -0.17
FOXA2Q9Y261 AC124947.2-201ENST00000547118 1133 ntBASIC13.96□□□□□ -0.17
FOXA2Q9Y261 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 MIR3652-201ENST00000579335 131 ntBASIC13.96□□□□□ -0.17
FOXA2Q9Y261 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
FOXA2Q9Y261 AC125634.1-201ENST00000438758 1403 ntBASIC13.96□□□□□ -0.18
FOXA2Q9Y261 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC13.96□□□□□ -0.18
FOXA2Q9Y261 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.18
FOXA2Q9Y261 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA2Q9Y261 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC13.96□□□□□ -0.18
FOXA2Q9Y261 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA2Q9Y261 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC13.96□□□□□ -0.18
FOXA2Q9Y261 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 NSUN5P1-202ENST00000421140 1535 ntBASIC13.95□□□□□ -0.18
FOXA2Q9Y261 NSUN5P2-203ENST00000457352 1529 ntBASIC13.95□□□□□ -0.18
FOXA2Q9Y261 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC13.95□□□□□ -0.18
FOXA2Q9Y261 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 AC111152.3-201ENST00000569699 673 ntBASIC13.95□□□□□ -0.18
FOXA2Q9Y261 AP005901.3-202ENST00000581653 237 ntBASIC13.95□□□□□ -0.18
FOXA2Q9Y261 AC005336.2-201ENST00000593183 939 ntBASIC13.95□□□□□ -0.18
FOXA2Q9Y261 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 AL138831.2-201ENST00000606564 490 ntBASIC13.95□□□□□ -0.18
FOXA2Q9Y261 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA2Q9Y261 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms