Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 TERC-201ENST00000602385 541 ntBASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 VPS51-217ENST00000639871 243 ntTSL 5 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 AC126755.1-201ENST00000525846 6405 ntBASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PDLIM3Q53GG5 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 SEC1P-202ENST00000473944 940 ntBASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 AP000867.3-201ENST00000524675 377 ntBASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 SLC25A1P1-201ENST00000528351 927 ntBASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 AP001005.1-201ENST00000571755 1248 ntBASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 CROCCP2-202ENST00000412962 2773 ntBASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PDLIM3Q53GG5 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PDLIM3Q53GG5 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms