Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 WASH6P-202ENST00000359512 1437 ntBASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 AL135999.2-201ENST00000622438 1686 ntBASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 AC079776.1-201ENST00000401540 1152 ntBASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 AC245100.3-201ENST00000441281 285 ntBASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 AL161645.1-201ENST00000622716 1255 ntBASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 PGF-202ENST00000405431 666 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC88AQ3V6T2 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 MIR4453-201ENST00000584019 89 ntBASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC88AQ3V6T2 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 NME2P1-201ENST00000426182 414 ntBASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 WASH4P-201ENST00000564273 1246 ntBASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 SLC25A1P3-201ENST00000395415 828 ntBASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CCDC88AQ3V6T2 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms