Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
RNF4P78317 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.96■□□□□ 0.15
RNF4P78317 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.96■□□□□ 0.15
RNF4P78317 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.96■□□□□ 0.15
RNF4P78317 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.96■□□□□ 0.15
RNF4P78317 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.96■□□□□ 0.15
RNF4P78317 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.96■□□□□ 0.15
RNF4P78317 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.96■□□□□ 0.15
RNF4P78317 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.96■□□□□ 0.15
RNF4P78317 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.96■□□□□ 0.15
RNF4P78317 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.96■□□□□ 0.15
RNF4P78317 AC145285.3-201ENST00000564603 959 ntBASIC15.96■□□□□ 0.15
RNF4P78317 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
RNF4P78317 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 AL805961.1-202ENST00000641562 540 ntBASIC15.96■□□□□ 0.15
RNF4P78317 AF228730.7-201ENST00000641842 219 ntBASIC15.96■□□□□ 0.15
RNF4P78317 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
RNF4P78317 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.96■□□□□ 0.15
RNF4P78317 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNF4P78317 CROCCP2-202ENST00000412962 2773 ntBASIC15.96■□□□□ 0.15
RNF4P78317 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
RNF4P78317 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.96■□□□□ 0.14
RNF4P78317 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.96■□□□□ 0.14
RNF4P78317 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
RNF4P78317 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.96■□□□□ 0.14
RNF4P78317 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
RNF4P78317 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.95■□□□□ 0.14
RNF4P78317 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RNF4P78317 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RNF4P78317 AC104109.2-201ENST00000602919 1418 ntBASIC15.95■□□□□ 0.14
RNF4P78317 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNF4P78317 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.95■□□□□ 0.14
RNF4P78317 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
RNF4P78317 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
RNF4P78317 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.95■□□□□ 0.14
RNF4P78317 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.95■□□□□ 0.14
RNF4P78317 AP002414.1-201ENST00000391405 1147 ntBASIC15.95■□□□□ 0.14
RNF4P78317 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.95■□□□□ 0.14
RNF4P78317 AP000347.1-202ENST00000435868 847 ntBASIC15.95■□□□□ 0.14
RNF4P78317 AC106730.1-201ENST00000566722 1090 ntBASIC15.95■□□□□ 0.14
RNF4P78317 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.95■□□□□ 0.14
RNF4P78317 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.95■□□□□ 0.14
RNF4P78317 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNF4P78317 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 AC008667.4-201ENST00000607370 168 ntBASIC15.95■□□□□ 0.14
RNF4P78317 Z83851.2-201ENST00000609564 659 ntBASIC15.95■□□□□ 0.14
RNF4P78317 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
RNF4P78317 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
RNF4P78317 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
RNF4P78317 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.95■□□□□ 0.14
RNF4P78317 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
RNF4P78317 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNF4P78317 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNF4P78317 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
RNF4P78317 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNF4P78317 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNF4P78317 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
RNF4P78317 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
RNF4P78317 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
RNF4P78317 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC15.94■□□□□ 0.14
RNF4P78317 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.94■□□□□ 0.14
RNF4P78317 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.94■□□□□ 0.14
RNF4P78317 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.94■□□□□ 0.14
RNF4P78317 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
RNF4P78317 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.94■□□□□ 0.14
RNF4P78317 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.94■□□□□ 0.14
RNF4P78317 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.94■□□□□ 0.14
RNF4P78317 IGHV3-65-201ENST00000523210 341 ntBASIC15.94■□□□□ 0.14
RNF4P78317 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 ZNF259P1-201ENST00000407656 1365 ntBASIC15.94■□□□□ 0.14
RNF4P78317 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
RNF4P78317 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNF4P78317 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms