Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 DNAJB3-202ENST00000449667 1266 ntBASIC22.55■■□□□ 1.2
COL3A1P02461 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC22.55■■□□□ 1.2
COL3A1P02461 MPDU1-223ENST00000582151 728 ntBASIC22.55■■□□□ 1.2
COL3A1P02461 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC22.55■■□□□ 1.2
COL3A1P02461 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC22.55■■□□□ 1.2
COL3A1P02461 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
COL3A1P02461 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC22.54■■□□□ 1.2
COL3A1P02461 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC22.54■■□□□ 1.2
COL3A1P02461 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC22.54■■□□□ 1.2
COL3A1P02461 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
COL3A1P02461 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL3A1P02461 INO80E-210ENST00000567705 880 ntTSL 3 BASIC22.54■■□□□ 1.2
COL3A1P02461 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC22.54■■□□□ 1.2
COL3A1P02461 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC22.54■■□□□ 1.2
COL3A1P02461 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC22.54■■□□□ 1.2
COL3A1P02461 AL691403.2-201ENST00000618460 490 ntBASIC22.54■■□□□ 1.2
COL3A1P02461 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL3A1P02461 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC22.54■■□□□ 1.2
COL3A1P02461 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL3A1P02461 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL3A1P02461 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC22.54■■□□□ 1.2
COL3A1P02461 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL3A1P02461 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL3A1P02461 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL3A1P02461 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL3A1P02461 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL3A1P02461 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC22.54■■□□□ 1.2
COL3A1P02461 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC22.54■■□□□ 1.2
COL3A1P02461 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC22.54■■□□□ 1.2
COL3A1P02461 AC005829.1-201ENST00000570002 483 ntBASIC22.54■■□□□ 1.2
COL3A1P02461 CYP2A7P1-201ENST00000595391 815 ntBASIC22.54■■□□□ 1.2
COL3A1P02461 AP001160.2-201ENST00000596071 487 ntBASIC22.54■■□□□ 1.2
COL3A1P02461 AL009183.1-201ENST00000603760 355 ntBASIC22.54■■□□□ 1.2
COL3A1P02461 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC22.54■■□□□ 1.2
COL3A1P02461 AL031055.1-201ENST00000606362 631 ntBASIC22.54■■□□□ 1.2
COL3A1P02461 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC22.54■■□□□ 1.2
COL3A1P02461 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC22.53■■□□□ 1.2
COL3A1P02461 AC131009.4-201ENST00000624048 1740 ntBASIC22.53■■□□□ 1.2
COL3A1P02461 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
COL3A1P02461 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL3A1P02461 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
COL3A1P02461 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
COL3A1P02461 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
COL3A1P02461 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL3A1P02461 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC22.53■■□□□ 1.2
COL3A1P02461 CD82-202ENST00000342935 967 ntTSL 5 BASIC22.53■■□□□ 1.2
COL3A1P02461 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL3A1P02461 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL3A1P02461 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC22.53■■□□□ 1.2
COL3A1P02461 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC22.53■■□□□ 1.2
COL3A1P02461 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC22.53■■□□□ 1.2
COL3A1P02461 MTRF1LP2-201ENST00000506027 1122 ntBASIC22.53■■□□□ 1.2
COL3A1P02461 AP001094.4-201ENST00000579008 2176 ntBASIC22.52■■□□□ 1.2
COL3A1P02461 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL3A1P02461 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
COL3A1P02461 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
COL3A1P02461 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
COL3A1P02461 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL3A1P02461 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC22.52■■□□□ 1.2
COL3A1P02461 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL3A1P02461 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC22.52■■□□□ 1.2
COL3A1P02461 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC22.52■■□□□ 1.2
COL3A1P02461 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL3A1P02461 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL3A1P02461 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC22.52■■□□□ 1.2
COL3A1P02461 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC22.52■■□□□ 1.2
COL3A1P02461 AC109635.5-201ENST00000533593 962 ntBASIC22.52■■□□□ 1.2
COL3A1P02461 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC22.52■■□□□ 1.2
COL3A1P02461 SIGLEC29P-201ENST00000599873 1114 ntBASIC22.52■■□□□ 1.2
COL3A1P02461 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC22.52■■□□□ 1.2
COL3A1P02461 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC22.52■■□□□ 1.2
COL3A1P02461 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC22.52■■□□□ 1.2
COL3A1P02461 REM2-202ENST00000536884 1331 ntTSL 2 BASIC22.52■■□□□ 1.2
COL3A1P02461 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL3A1P02461 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
COL3A1P02461 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.19
COL3A1P02461 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.19
COL3A1P02461 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.19
COL3A1P02461 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.19
COL3A1P02461 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
COL3A1P02461 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL3A1P02461 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
COL3A1P02461 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms