Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 AC022211.2-201ENST00000585075 2527 ntBASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 TCAP-202ENST00000578283 583 ntTSL 5 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDZRN3Q9UPQ7 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 AC007967.3-201ENST00000434308 558 ntBASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC22.24■■□□□ 1.15
PDZRN3Q9UPQ7 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 BX005266.1-201ENST00000473402 457 ntBASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDZRN3Q9UPQ7 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 AC099398.1-201ENST00000567919 2776 ntBASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 AC096633.1-201ENST00000422446 749 ntBASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 METTL21AP1-201ENST00000438852 635 ntBASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 SNHG9-202ENST00000564014 471 ntBASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 AL589182.2-201ENST00000619332 1049 ntBASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 AD001527.2-201ENST00000622994 785 ntBASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PDZRN3Q9UPQ7 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms