Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLCF1Q9UBD9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 AC023274.1-201ENST00000418278 595 ntBASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 AC002310.6-201ENST00000624451 1377 ntBASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLCF1Q9UBD9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
CLCF1Q9UBD9 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLCF1Q9UBD9 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLCF1Q9UBD9 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLCF1Q9UBD9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLCF1Q9UBD9 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLCF1Q9UBD9 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLCF1Q9UBD9 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 DNAJB3-201ENST00000446806 729 ntBASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 PAWRP1-201ENST00000451083 565 ntBASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CLCF1Q9UBD9 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 UPF3AP3-201ENST00000420996 769 ntBASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 GPX1P2-201ENST00000429271 606 ntBASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 AC018845.2-201ENST00000568326 409 ntBASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 AC010327.4-202ENST00000591484 748 ntBASIC15.32■□□□□ 0.04
CLCF1Q9UBD9 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms