Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.29■□□□□ 0.84
NEDD4P46934 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
NEDD4P46934 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NEDD4P46934 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NEDD4P46934 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NEDD4P46934 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.29■□□□□ 0.84
NEDD4P46934 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.28■□□□□ 0.84
NEDD4P46934 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.28■□□□□ 0.84
NEDD4P46934 AC108073.2-201ENST00000464002 357 ntBASIC20.28■□□□□ 0.84
NEDD4P46934 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.28■□□□□ 0.84
NEDD4P46934 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.28■□□□□ 0.84
NEDD4P46934 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.28■□□□□ 0.84
NEDD4P46934 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.28■□□□□ 0.84
NEDD4P46934 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.28■□□□□ 0.84
NEDD4P46934 AP001094.4-201ENST00000579008 2176 ntBASIC20.28■□□□□ 0.84
NEDD4P46934 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 TERC-201ENST00000602385 541 ntBASIC20.28■□□□□ 0.84
NEDD4P46934 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
NEDD4P46934 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 AC005593.1-201ENST00000624894 515 ntBASIC20.28■□□□□ 0.84
NEDD4P46934 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.28■□□□□ 0.84
NEDD4P46934 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
NEDD4P46934 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
NEDD4P46934 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
NEDD4P46934 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.28■□□□□ 0.84
NEDD4P46934 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
NEDD4P46934 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
NEDD4P46934 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
NEDD4P46934 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEDD4P46934 AP002414.1-201ENST00000391405 1147 ntBASIC20.27■□□□□ 0.84
NEDD4P46934 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.27■□□□□ 0.84
NEDD4P46934 AC009947.1-201ENST00000444350 727 ntBASIC20.27■□□□□ 0.84
NEDD4P46934 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.27■□□□□ 0.84
NEDD4P46934 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.27■□□□□ 0.84
NEDD4P46934 IGHV3-65-201ENST00000523210 341 ntBASIC20.27■□□□□ 0.84
NEDD4P46934 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.27■□□□□ 0.84
NEDD4P46934 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.27■□□□□ 0.84
NEDD4P46934 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.27■□□□□ 0.84
NEDD4P46934 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.27■□□□□ 0.84
NEDD4P46934 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
NEDD4P46934 AC008667.4-201ENST00000607370 168 ntBASIC20.27■□□□□ 0.84
NEDD4P46934 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.27■□□□□ 0.84
NEDD4P46934 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.27■□□□□ 0.84
NEDD4P46934 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEDD4P46934 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NEDD4P46934 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NEDD4P46934 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NEDD4P46934 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEDD4P46934 AC022211.2-201ENST00000585075 2527 ntBASIC20.27■□□□□ 0.84
NEDD4P46934 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEDD4P46934 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NEDD4P46934 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
NEDD4P46934 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NEDD4P46934 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
NEDD4P46934 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEDD4P46934 PRORSD1P-202ENST00000563365 2154 ntBASIC20.27■□□□□ 0.84
NEDD4P46934 AC104109.2-201ENST00000602919 1418 ntBASIC20.27■□□□□ 0.84
NEDD4P46934 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NEDD4P46934 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.83
NEDD4P46934 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.27■□□□□ 0.83
NEDD4P46934 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NEDD4P46934 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NEDD4P46934 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NEDD4P46934 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NEDD4P46934 AL022342.1-201ENST00000400363 863 ntBASIC20.27■□□□□ 0.83
NEDD4P46934 PAWRP1-201ENST00000451083 565 ntBASIC20.27■□□□□ 0.83
NEDD4P46934 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.27■□□□□ 0.83
NEDD4P46934 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.27■□□□□ 0.83
NEDD4P46934 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
NEDD4P46934 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
NEDD4P46934 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NEDD4P46934 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NEDD4P46934 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.26■□□□□ 0.83
NEDD4P46934 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
NEDD4P46934 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
NEDD4P46934 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NEDD4P46934 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NEDD4P46934 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.26■□□□□ 0.83
NEDD4P46934 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NEDD4P46934 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.26■□□□□ 0.83
NEDD4P46934 AC060834.1-201ENST00000443027 2032 ntBASIC20.26■□□□□ 0.83
NEDD4P46934 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.26■□□□□ 0.83
NEDD4P46934 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NEDD4P46934 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.26■□□□□ 0.83
NEDD4P46934 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
NEDD4P46934 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms