Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.75■□□□□ 0.43
COL6A3P12111 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC17.75■□□□□ 0.43
COL6A3P12111 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.75■□□□□ 0.43
COL6A3P12111 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.75■□□□□ 0.43
COL6A3P12111 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.75■□□□□ 0.43
COL6A3P12111 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.75■□□□□ 0.43
COL6A3P12111 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.75■□□□□ 0.43
COL6A3P12111 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.74■□□□□ 0.43
COL6A3P12111 FOXO1B-201ENST00000504678 1527 ntBASIC17.74■□□□□ 0.43
COL6A3P12111 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.74■□□□□ 0.43
COL6A3P12111 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
COL6A3P12111 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.74■□□□□ 0.43
COL6A3P12111 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.74■□□□□ 0.43
COL6A3P12111 PTK2-225ENST00000520892 571 ntTSL 4 BASIC17.74■□□□□ 0.43
COL6A3P12111 AL365330.1-201ENST00000607459 531 ntBASIC17.74■□□□□ 0.43
COL6A3P12111 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A3P12111 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
COL6A3P12111 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
COL6A3P12111 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A3P12111 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A3P12111 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL6A3P12111 HMGA1P7-201ENST00000406908 502 ntBASIC17.74■□□□□ 0.43
COL6A3P12111 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A3P12111 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.74■□□□□ 0.43
COL6A3P12111 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.74■□□□□ 0.43
COL6A3P12111 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A3P12111 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
COL6A3P12111 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
COL6A3P12111 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL6A3P12111 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A3P12111 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A3P12111 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A3P12111 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.73■□□□□ 0.43
COL6A3P12111 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 SLC25A24P2-201ENST00000415059 510 ntBASIC17.73■□□□□ 0.43
COL6A3P12111 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.73■□□□□ 0.43
COL6A3P12111 FO681548.1-201ENST00000455617 1132 ntBASIC17.73■□□□□ 0.43
COL6A3P12111 STK19B-204ENST00000512515 211 ntBASIC17.73■□□□□ 0.43
COL6A3P12111 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.73■□□□□ 0.43
COL6A3P12111 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.73■□□□□ 0.43
COL6A3P12111 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
COL6A3P12111 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A3P12111 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A3P12111 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.73■□□□□ 0.43
COL6A3P12111 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
COL6A3P12111 FAM21FP-201ENST00000426241 1131 ntBASIC17.73■□□□□ 0.43
COL6A3P12111 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.73■□□□□ 0.43
COL6A3P12111 AP001258.2-201ENST00000529891 490 ntBASIC17.73■□□□□ 0.43
COL6A3P12111 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
COL6A3P12111 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A3P12111 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.73■□□□□ 0.43
COL6A3P12111 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
COL6A3P12111 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A3P12111 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 MIR8072-201ENST00000614241 80 ntBASIC17.72■□□□□ 0.43
COL6A3P12111 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.72■□□□□ 0.43
COL6A3P12111 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
COL6A3P12111 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.72■□□□□ 0.43
COL6A3P12111 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL6A3P12111 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
COL6A3P12111 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A3P12111 RPL7P3-201ENST00000441388 714 ntBASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms