Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 AC005332.3-201ENST00000589904 676 ntBASIC16.82■□□□□ 0.28
VPS4AQ9UN37 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 AL773604.1-201ENST00000617417 272 ntBASIC16.82■□□□□ 0.28
VPS4AQ9UN37 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 CROCCP1-201ENST00000426910 5675 ntBASIC16.82■□□□□ 0.28
VPS4AQ9UN37 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 TNRC18P3-201ENST00000441896 2691 ntBASIC16.82■□□□□ 0.28
VPS4AQ9UN37 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 CROCCP2-202ENST00000412962 2773 ntBASIC16.81■□□□□ 0.28
VPS4AQ9UN37 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 AC092183.1-201ENST00000469884 875 ntBASIC16.81■□□□□ 0.28
VPS4AQ9UN37 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.81■□□□□ 0.28
VPS4AQ9UN37 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VPS4AQ9UN37 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 AL356309.3-201ENST00000624132 1934 ntBASIC16.8■□□□□ 0.28
VPS4AQ9UN37 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VPS4AQ9UN37 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 KRT8P47-201ENST00000604727 1398 ntBASIC16.79■□□□□ 0.28
VPS4AQ9UN37 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 AC084018.2-201ENST00000613093 2607 ntBASIC16.79■□□□□ 0.28
VPS4AQ9UN37 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms