Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 AC073621.1-201ENST00000392730 636 ntBASIC16.1■□□□□ 0.17
BEST3Q8N1M1 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 KRT18P13-201ENST00000400056 1290 ntBASIC16.1■□□□□ 0.17
BEST3Q8N1M1 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 AC136632.2-201ENST00000512891 861 ntBASIC16.1■□□□□ 0.17
BEST3Q8N1M1 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 AC092865.5-201ENST00000545435 363 ntBASIC16.1■□□□□ 0.17
BEST3Q8N1M1 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 AC006538.3-201ENST00000612495 578 ntBASIC16.1■□□□□ 0.17
BEST3Q8N1M1 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 NCF1C-201ENST00000438382 1427 ntBASIC16.1■□□□□ 0.17
BEST3Q8N1M1 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BEST3Q8N1M1 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 ELK2BP-201ENST00000415014 1224 ntBASIC16.09■□□□□ 0.17
BEST3Q8N1M1 AC009947.1-201ENST00000444350 727 ntBASIC16.09■□□□□ 0.17
BEST3Q8N1M1 AC002558.1-201ENST00000488906 803 ntBASIC16.09■□□□□ 0.17
BEST3Q8N1M1 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 FAM197Y3-203ENST00000618346 717 ntBASIC16.09■□□□□ 0.17
BEST3Q8N1M1 AC004706.3-202ENST00000621574 984 ntBASIC16.09■□□□□ 0.17
BEST3Q8N1M1 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 PGM5P2-202ENST00000637225 1043 ntBASIC16.09■□□□□ 0.17
BEST3Q8N1M1 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.09■□□□□ 0.17
BEST3Q8N1M1 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
BEST3Q8N1M1 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.08■□□□□ 0.17
BEST3Q8N1M1 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
BEST3Q8N1M1 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.08■□□□□ 0.17
BEST3Q8N1M1 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
BEST3Q8N1M1 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
BEST3Q8N1M1 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
BEST3Q8N1M1 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
BEST3Q8N1M1 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
BEST3Q8N1M1 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BEST3Q8N1M1 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms